Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 3e-14 >seq5 Length=2641308 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||||||||| ||||| | ||||| ||| ||||| ||||||| || Sbjct 2485694 AAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCA 2485635 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || |||| | ||| || || |||||| || |||||||| |||| | Sbjct 2485634 TCTGATACGATTGAGAAT--GTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTG 2485577 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | ||||| ||||| ||||||||||| || || | | | | ||| || |||| Sbjct 2485576 ATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATT 2485517 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | || || ||||| || ||||| || ||||| Sbjct 2485516 ATAATATTCAAAAGGAATCTACTTTACACTTGGT 2485483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355859030094279