Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 116 9e-21 seq4 102 2e-16 >seq5 Length=2641308 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | ||| || || ||||| || |||||||| | | ||||||||||||||| | || Sbjct 2485488 GTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTG 2485547 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || || || || | | |||||| |||||||||| |||||| || || || || || Sbjct 2485548 TTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 2485607 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | || || || || || || ||||| ||||| || || || || || ||||| || Sbjct 2485608 TGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGT 2485667 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 | || |||||||| | |||||||| Sbjct 2485668 TAATGTTTTTACAAAAATTTGCATTTT 2485694 >seq4 Length=1968205 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| | || || || ||||| ||||||||||| | | || ||||| Sbjct 458819 TCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCTGATAAAGTTCTTCC 458760 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || ||||| || || | | |||||||||||| |||| |||||| || Sbjct 458759 ATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTT 458700 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || ||| || || || || ||||||||||| || || || || || || Sbjct 458699 ATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGACGTCAAGGGTTAT 458640 Query 211079 CGTCTTTCC 211087 || ||||| Sbjct 458639 AGTTTTTCC 458631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159140460279605