Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq4 116 3e-21 >seq5 Length=2641308 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| ||||| || ||||| | || |||||||| || || || || ||||| | Sbjct 2485694 AAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCA 2485635 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| |||| |||||| || || |||||||| | || || || Sbjct 2485634 TCTGATACGATTGAGAATGTTAAGGCAAAAA-TTCAAGATAAAGAAGGAATTCCTCCTGA 2485576 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | ||||||||||| || |||||| | ||||| | | | || ||| ||||| Sbjct 2485575 TCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTA 2485516 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| || || || ||||| || || Sbjct 2485515 TAATATTCAAAAGGAATCTACTTTACACTTGGT 2485483 >seq4 Length=1968205 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAA 23696 |||||||| || || || || || || | | ||||| |||| ||| |||| ||||| Sbjct 458631 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCAAAA 458690 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | || || |||||||| | || || || ||||| | ||||||||||| || ||||| Sbjct 458691 A-TTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAACA 458749 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTT 23816 | | ||||| | | | |||||| ||||| ||||| ||||| || || |||||||| || Sbjct 458750 ATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATTACACTT 458809 Query 23817 AGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || |||| || Sbjct 458810 AGTGTTAAGATTAAGAGGTGG 458830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006399154716