Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 574 7e-159 >seq6 Length=3179732 Score = 574 bits (636), Expect = 7e-159 Identities = 1158/1701 (68%), Gaps = 44/1701 (3%) Strand=Plus/Plus Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| |||||| || || || || ||||| | ||||| ||||||| ||||||| Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT---TTGTATTTTGAATGGAA 77039 || | ||||||| | | | ||| | |||||||| | | || ||| |||||| | Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAGTCATCTGGTATTTCACTTATATATTGAAT---A 1469737 Query 77040 CCACCATC-TGA--TAT-AATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGT 77095 | |||| ||| ||| ||||| | || || || |||| ||| || || || Sbjct 1469738 CTTCCATTGTGAGCTATTAATTGCTGT-TTCATGTCTTCATCCCATAAACCTCTGTCAAA 1469796 Query 77096 TAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGT 77155 |||| || | | | ||| |||||||| | |||||||||| || ||||| | | Sbjct 1469797 TAAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATA 1469856 Query 77156 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGA 77215 ||||||||||| ||||||||||| | |||||||||||||| | |||||| | |||||| Sbjct 1469857 ATAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGA 1469916 Query 77216 AGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 77275 ||||||||||||||||| | ||||| ||||| | ||||||| | | ||||||| | Sbjct 1469917 TGCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGC 1469976 Query 77276 TTTTAGATATTTCCAATCCCAA-AGATCTGA--AGGTACAACATCCCAAAGATCGTATTG 77332 ||||| | | |||||||||| | | | | | | | ||| ||| | ||| |||| Sbjct 1469977 TTTTAATTCATCCCAATCCCAATATTTGTTATCAACTTTAGCATTCCACATATCAAATTG 1470036 Query 77333 TAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGC 77392 || || || | || || ||| | ||| | |||||| ||||| | | || ||| Sbjct 1470037 TAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGC 1470096 Query 77393 TAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 77452 | |||| | | ||| || || | ||||| || ||||| || || | ||||| | Sbjct 1470097 CAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAA 1470156 Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512 |||| ||| || | ||| | ||||| ||| | ||||| | |||||||||||| Sbjct 1470157 TTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCC 1470216 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572 ||||| |||||||||||||| |||||||| |||| || |||| |||||| | || Sbjct 1470217 TTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTGG 1470276 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 ||||||||| | ||||||||||||| | |||||| || | ||| | || | Sbjct 1470277 ATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCATA 1470336 Query 77633 TAGTTTAAGAAAATCAAA-------TCTTCCATCTATAACAAACATGTTCAAAGCTATAG 77685 || || ||||| || | ||||| | | ||||| | |||||||||| Sbjct 1470337 TAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCT-ACAAATTTACATAAAGCTATAG 1470395 Query 77686 ATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATA 77745 |||| | |||||| || || || |||| || || ||||| || || || ||||| Sbjct 1470396 ATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACATA 1470455 Query 77746 GATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCT 77805 ||||||||||| ||||| |||| ||||| || ||| ||| ||| || || || | Sbjct 1470456 AGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATCTT 1470515 Query 77806 TATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGA 77865 |||| || ||| | || || ||||| || || || | |||| ||| | Sbjct 1470516 TATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAAT 1470575 Query 77866 CTCTAGCTTTTATCATAGATTTGTATCGC---CTCTCTCTTTCATATTGAGTATATAGCC 77922 || ||| | | | ||| | || | | ||| |||||||| |||||||| Sbjct 1470576 CTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAATT 1470632 Query 77923 GTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATG 77982 ||||||||| || |||||| ||| || || || ||||||||||| ||||| |||| Sbjct 1470633 TTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATG 1470692 Query 77983 ACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| | || ||| ||||||| |||||||| |||||||| | ||||| |||| || Sbjct 1470693 TCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAA 1470752 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 ||| |||||| | ||| |||||| ||||| |||||| | | ||| | ||| || | Sbjct 1470753 ATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAA 1470812 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 ||||| |||||||||||||| | ||| | || | ||| ||||| || | Sbjct 1470813 ATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTCCAC 1470872 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 | ||||||| |||||| || || | |||| ||||||| ||||| || | | ||| |||| Sbjct 1470873 CTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCATTAG 1470932 Query 78223 ATGTTCCATTTGTTCCAGAAATATAA-----CT-TCCACTTGCGCGAATAT-TACTAATG 78275 || ||||||| || || ||||||| || ||| ||| |||| | || | Sbjct 1470933 ATATTCCATTGGTACCTCTAATATAAGAATTCTGTCCTCTT------ATATCTTGTACT- 1470985 Query 78276 GATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAG 78335 | || || || |||||||| | ||| |||| ||| || |||| | || || | Sbjct 1470986 GCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAA 1471045 Query 78336 ATACCCTCTATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATG 78394 ||||| || ||| || | ||| || ||| ||| ||||| ||||||||| | Sbjct 1471046 ATACCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCT 1471104 Query 78395 AACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAG 78454 ||||||| |||||| ||||| |||| |||||| ||||| |||| | ||| | || Sbjct 1471105 TGGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAA 1471164 Query 78455 ATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCAT 78514 || |||||||| | |||| |||||||| | ||| || || | | || | ||| Sbjct 1471165 ATGATATGTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCAT 1471224 Query 78515 CAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 78574 || | ||| ||||||||||||| | |||||||| || || || || ||| |||| Sbjct 1471225 TAATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTC 1471284 Query 78575 CAAAGTTTTAAAACCAAAATA 78595 ||| |||||||| |||||||| Sbjct 1471285 CAACGTTTTAAATCCAAAATA 1471305 Score = 217 bits (240), Expect = 2e-51 Identities = 591/885 (67%), Gaps = 40/885 (5%) Strand=Plus/Plus Query 47831 TTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTT 47890 ||| | ||| ||||| ||||||||| || | || | |||||| ||||| || ||||| Sbjct 149883 TTGTGCCATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTT 149942 Query 47891 GCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAttttttt 47950 |||| | ||| || ||||| ||| ||||||||| | || ||||||| Sbjct 149943 TCCTTGAAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGA 150002 Query 47951 AAATCCTAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT 48007 ||||||| |||| ||| | |||||| ||||| |||||||||||| ||| | Sbjct 150003 GCATCCTAAACATTCT--AATAA-TCTATCAGCAACAAATTCTATATATTGAGACATAAG 150059 Query 48008 TTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTC-CGTAAGAAAC-TCTTGTTCG 48065 | | ||||||||||||| | | | ||||| | || | || ||| |||| || Sbjct 150060 TCTAGAATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTT--TCA 150117 Query 48066 ATAGTGACAGCATCCACTATTATCGATGTT----ACCGTTTCCTC----ACTTGGTGGAT 48117 | ||||| || ||| |||| || ||| ||| || | || | || Sbjct 150118 ACTTCTACAGCTTCT----TTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATT-AT 150172 Query 48118 ACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAA 48177 || ||| || | ||||| || |||||| ||| | |||||||||||||| | Sbjct 150173 CTAATAAAC---TATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGA 150229 Query 48178 TTAATTCGTTAGAAAATGTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATAT 48235 ||||||| ||| |||||| | |||| | | ||| | |||| || | |||||| || Sbjct 150230 TTAATTCATTACTAAATGTCAAACCGTGTAATTTATTTT--GTTTCTTAAACCAAAAAAT 150287 Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 ||| ||| ||| || ||||| ||||| || ||| || || ||| || Sbjct 150288 TGCACAAAAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTC 150347 Query 48296 TCCGTAACTGGCTTCGTTGTGT--ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACA 48353 | ||| | || || | ||||| | |||||| || || || ||||| Sbjct 150348 AGCA-AAC-GAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACG 150405 Query 48354 CAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt--tttttCATTGCTATCTTTAACGT 48411 ||| || |||||||||||| || | ||| || | |||| || |||||||| | Sbjct 150406 GCAGGGATATTTTCTATAGCATGAA--ATAAATTTAATCTTTCTTTTTCATCTTTAATAT 150463 Query 48412 AAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATC 48471 || |||| ||||| | |||||| |||| || ||||||||||| | || || ||||| Sbjct 150464 AATTATCAATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGG 150523 Query 48472 CGTAAAAACATCTCGCTTCTGTGATCTGTACCTC-CGTACAAAATCGTTCAGCCAAATTC 48530 ||||| | | ||||| || || || ||||| | || ||| | | ||||||||| Sbjct 150524 AATAAAATTTTTTAGCTTCCGTTATTTGAACCTCTCTTAAAAACTTACT-AGCCAAATTT 150582 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTT 48590 || |||||| |||||||| || |||||||||||||| ||||| || ||||||| ||| Sbjct 150583 TCTAATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTC 150642 Query 48591 TCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCT 48650 || || | ||| ||| | | || || | ||| | |||| ||| | |||||| ||| Sbjct 150643 TCATTTTCATTCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCT 150702 Query 48651 GTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCA 48695 |||||||| || || || ||||| || || | || ||| | |||| Sbjct 150703 GTCCAAAAAGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCA 150747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662053029280