Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 562 4e-155 >seq6 Length=3179732 Score = 562 bits (622), Expect = 4e-155 Identities = 1150/1694 (68%), Gaps = 30/1694 (2%) Strand=Plus/Plus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| |||||| || || || || ||||| | ||||| ||||||| ||||||| Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGAT 75634 || | ||||||| | | | ||| | |||||||| | | || ||| |||||| | Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAGTCATCTGGTATTTCACTTATATATTGAATACTT 1469740 Query 75635 CCGCCATCAGATAT-AATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || | || ||| ||||| | || || || |||| ||| || ||| || ||| Sbjct 1469741 CCATTGTGAGCTATTAATTGCTGT-TTCATGTCTTCATCCCATAAACCTCTGTCAAATAA 1469799 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | || | | | ||| |||||||||| |||||||||| || ||||||| | || Sbjct 1469800 ATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAATA 1469859 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 ||||||||| ||||||||||| | |||||||||||||| | |||||| | ||| || || Sbjct 1469860 AATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGC 1469919 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 ||| ||||||||||| | ||||| ||||| | ||||||| | | ||||||| |||| Sbjct 1469920 AGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCTTT 1469979 Query 75874 TAGATATTTCCAATCCCAA-AGATCTGATGG--TACAACATCCCAGAGATCGTATTGTAG 75930 || | | |||||||||| | | | || | | ||| ||| | ||| |||||| Sbjct 1469980 TAATTCATCCCAATCCCAATATTTGTTATCAACTTTAGCATTCCACATATCAAATTGTAA 1470039 Query 75931 AATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAG 75990 || || | ||| || ||| | ||| | ||| || | || | || ||| | Sbjct 1470040 TATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGCCAA 1470099 Query 75991 TTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC 76050 ||| | | ||||| ||| | ||||| || ||||| || || | ||||| | || Sbjct 1470100 TTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAATTC 1470159 Query 76051 TTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTG 76110 || || || | ||| | ||||| ||| | ||||||| |||||||| ||| || Sbjct 1470160 TTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCCTTG 1470219 Query 76111 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTA 76170 ||| |||||||||||||| |||||||| |||| || ||| |||||| | || || Sbjct 1470220 AACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTGGATA 1470279 Query 76171 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAG 76230 |||||| | ||||||||||||| | |||||| || | ||| | || | || Sbjct 1470280 ATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCATATAA 1470339 Query 76231 TTTGAGAAAATCAAATT-------TTCCATCTATCACAAACATATTAAGAGCTATAGATG 76283 || ||||| |||| ||||| | | ||||| || | ||||||||||| Sbjct 1470340 CTTTTTAAAATTGAATTCTTTTTTTTCCAAATCT-ACAAATTTACATAAAGCTATAGATG 1470398 Query 76284 CTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGAT 76343 | | |||||| || || || |||| || | || ||||| || || || |||| | Sbjct 1470399 CCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACATAAGT 1470458 Query 76344 TACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTAT 76403 ||||||| || ||||| || | ||||| || ||| ||| ||||| || || |||| Sbjct 1470459 TACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATCTTTAT 1470518 Query 76404 AAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTC 76463 | || | | | || ||| ||||| || || || | |||| ||| | || Sbjct 1470519 ATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTT 1470578 Query 76464 TAGCTTTTATTATAGATTTGTATCGC---TTCTCTCTTTCATATTGTGTATATAACCGTT 76520 ||| | | | ||| | || | || ||| |||||||| |||||||| || Sbjct 1470579 GAGCAAGAACTGT---TTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAATTTTT 1470635 Query 76521 CAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACC 76580 ||||||| || |||||| ||| ||||| ||||||||||| |||||||| |||| || Sbjct 1470636 CAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCC 1470695 Query 76581 ACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 76640 | | || ||| ||||| | |||||||| |||||||| | ||||| |||| ||||| Sbjct 1470696 AATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAAATA 1470755 Query 76641 GATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAA 76700 |||||| | ||| |||||| ||||| |||||| | | ||||| || || | | Sbjct 1470756 AATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAAATA 1470815 Query 76701 TATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCT 76760 |||| |||||||||||||| | ||| | || | ||| ||||| || || | Sbjct 1470816 TATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTCCACCTT 1470875 Query 76761 GATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATG 76820 |||||| |||||| ||||| | |||| ||||||| ||||| || | | || |||||| Sbjct 1470876 GATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCATTAGATA 1470935 Query 76821 TACCATTTGTTCCAGAAATATA--ACTTCCACATGCACGAATAT-TACTAATAGATAGGC 76877 | ||||| || || |||||| | ||| | | | |||| | || | | || | Sbjct 1470936 TTCCATTGGTACCTCTAATATAAGAATTC--TGTCCTCTTATATCTTGTACT-GCTACAC 1470992 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || |||||||| ||||| |||| |||||| |||| | || ||| | || || | Sbjct 1470993 CAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATACCTT 1471052 Query 76938 CTATACTATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 | ||| ||| | ||| || ||| ||| ||||| ||||||||| | ||| Sbjct 1471053 CAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTGGGGTT 1471111 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 |||| ||||||||||||||||| |||||| || || |||| | ||| | || || ||| Sbjct 1471112 CCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATGATAT 1471171 Query 77057 GTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116 ||||| | | || ||||| || | ||| || || | || || | ||| || | | Sbjct 1471172 GTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTAATAAA 1471231 Query 77117 TGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 77176 || ||||||| ||| | | | |||||||| || || || || ||| ||||||| ||| Sbjct 1471232 TGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAACGTT 1471291 Query 77177 TTAAAACCAAAATA 77190 ||||| |||||||| Sbjct 1471292 TTAAATCCAAAATA 1471305 Score = 203 bits (224), Expect = 5e-47 Identities = 589/889 (66%), Gaps = 36/889 (4%) Strand=Plus/Plus Query 46320 TTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTT 46379 ||||| ||| ||||| |||||| || || | || | |||||| ||||| || ||||| Sbjct 149883 TTGTGCCATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTT 149942 Query 46380 GCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAttttttt 46439 |||| | ||| || ||||| ||| ||| ||||| | || ||||||| Sbjct 149943 TCCTTGAAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGA 150002 Query 46440 AAATCCTAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCAT 46496 ||||||| |||| ||| | |||||| ||||| ||||||||||| ||| | Sbjct 150003 GCATCCTAAACATTCT--AATAA-TCTATCAGCAACAAATTCTATATATTGAGACATAAG 150059 Query 46497 TTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTC-CGTAAGAAAC-TCTTGTTCA 46554 | | ||||||||||||| | | |||| | || | || ||| |||| ||| Sbjct 150060 TCTAGAATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTT--TCA 150117 Query 46555 ATAGTGACAGCATCCGATATTATCGATGTT----ACTGTTTCCTCACTTGGTGGATGCAT 46610 | ||||| || ||| |||| || || ||| || || || || Sbjct 150118 ACTTCTACAGCTTCT----TTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATT-AT 150172 Query 46611 CAAATGTT-TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTA 46669 | ||| || | ||||| || |||||| ||| | |||||||||||||| |||| Sbjct 150173 CTAATAAACTATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTA 150232 Query 46670 ATTCGTTAGAAAATGTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 |||| ||| |||||| | || | | ||| | | || || | |||||| || || Sbjct 150233 ATTCATTACTAAATGTCAAACCGTGTAATTTATTTT--GTTTCTTAAACCAAAAAATTGC 150290 Query 46728 CGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC 46787 ||| ||| || ||||| ||||| ||| || || |||| ||| || | Sbjct 150291 ACAAAAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGC 150350 Query 46788 GTA---ACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACA 46844 | | | | ||||||| ||||| || ||||| || || || ||||| Sbjct 150351 AAACGAATTAGTATCATTA---ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGC 150407 Query 46845 AGGCATTGTTTCTATAGCATTAAAGAGAAAGtt--tttttCATCACTATCTTTAACATAT 46902 ||| || |||||||||||| ||| | || || | |||| | |||||||| ||| Sbjct 150408 AGGGATATTTTCTATAGCATGAAATA--AATTTAATCTTTCTTTTTCATCTTTAATATAA 150465 Query 46903 GTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCG 46962 |||| ||||| | |||||| ||||||||||||| ||||| | ||| || ||||| Sbjct 150466 TTATCAATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAA 150525 Query 46963 TAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC-AGACAAATTCTC 47021 ||||| | | ||||| || || || |||||| | |||| | | | || |||||| || Sbjct 150526 TAAAATTTTTTAGCTTCCGTTATTTGAACCTCTCT-TAAAAACTTACTAGCCAAATTTTC 150584 Query 47022 ATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTC 47081 ||||| |||||||| || ||||||||||| || ||||| || ||||||| ||| || Sbjct 150585 TAATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTC 150644 Query 47082 ATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 47141 || | ||| ||| | | || || | ||| | |||| ||| | |||||| ||||| Sbjct 150645 ATTTTCATTCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGT 150704 Query 47142 CCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATAT 47190 ||| || || || || ||||| || || | || ||| | |||| ||||| Sbjct 150705 CCAAAAAGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATAT 150753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712927475624640