Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 109 1e-18 seq5 93.3 1e-13 >seq4 Length=1968205 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || ||||| ||||| ||||| | ||||||||| |||||||||| ||| || Sbjct 458800 GTAGATTCCTTTTGAATGTTATAATCTGATAAAGTTCTTCCATCTTCTAATTGTTTTCCT 458741 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || || ||||| | | |||||||| || |||||||||||| || Sbjct 458740 GCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 458681 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 ||| |||| | | |||| || ||| || ||||| || |||||||| || Sbjct 458680 ACATTCTCAATGGTGTCAGATGGCTCGACGTCAAGGGTTATAGTTTTTCC 458631 >seq5 Length=2641308 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | |||||| || ||||| || || ||||| | ||| || || |||||||||| Sbjct 2485485 CAAG-TGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTA 2485543 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || || || | || || || || | | |||||||| || ||||||| Sbjct 2485544 ATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAA 2485603 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| || ||| |||| | | || || ||| || ||||| ||||| ||||| | Sbjct 2485604 TTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTC 2485663 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | || || || || | |||||||| Sbjct 2485664 CAGTTAATGTTTTTACAAAAATTTGCATTTT 2485694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153809313353367