Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 1e-12 >seq13 Length=1076939 Score = 89.7 bits (98), Expect = 1e-12 Identities = 245/370 (66%), Gaps = 14/370 (4%) Strand=Plus/Plus Query 43987 GCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCC--TCAAACAGAAAGGACTC 44044 || || ||||| || || | ||||| ||||| | ||| ||||| |||| || | Sbjct 508432 GCATCAACATCTGAATTATTTGGAAAAGTTCA--ATGTTCTATTCAAAATGAAAATACAC 508489 Query 44045 CGTTTTATCCCCGGAGT----CCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGT 44100 | |||||||| ||| || |||| | || || ||||||| ||| ||| Sbjct 508490 CATTTTATCC----AGTATCCCCTTATGCCATAGCAAAATTATATGCACATTATATTACA 508545 Query 44101 AAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAA 44160 | ||||||| | || || || ||||| | |||| |||| || ||||| ||| Sbjct 508546 ATAAATTATAGAGAATCATACAATATGTTTTGTATTAATGGTATTTTATTTAATCATGAA 508605 Query 44161 AGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATT 44220 ||||| | ||||| | ||| || || | ||||| || | || |||| || ||| Sbjct 508606 AGTCCAAGAAGAGGAGAAACGTTTGTTACAAGAAAAATTACTAGAGGTATTGCAAAAATT 508665 Query 44221 TTCAACGGGACAGAAAAATGCATGTATCT-AGGAAACATAGACTCTAAAAGAGATTGGGG 44279 || ||||| || ||| ||||| ||| || ||||| | | ||||||||||| Sbjct 508666 CAAAAAAAATTAGAAACATCCAT-TATCTTAGGTAATATAGATACATATAGAGATTGGGG 508724 Query 44280 ATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTCAGACGA 44339 | |||| |||||||||| | || |||| || |||||||||||| | | |||| || Sbjct 508725 ACATGCTAAGGATTATGTATATGCTATGTATCTTATGTTGCAACAAAATGAGGCAGATGA 508784 Query 44340 CTACGTTATT 44349 | |||||| Sbjct 508785 TTTTGTTATT 508794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046728779384158