Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq6 208 8e-49 >seq6 Length=3179732 Score = 208 bits (230), Expect = 8e-49 Identities = 553/830 (67%), Gaps = 35/830 (4%) Strand=Plus/Plus Query 23217 TTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 ||||||||| || | || | | | || ||||| ||||| || || | | ||| || Sbjct 149901 TTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 149960 Query 23277 TTCCATAAAATCAAATGGATTA---GAA--GTATTATATACAGCTTTACATGATAATTCC 23331 ||||| ||| ||||||||| ||| | | | || ||| | | | | |||| Sbjct 149961 GTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCAT--CCTAAACATTC- 150017 Query 23332 TTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC-ATAGTTTATACC 23390 ||| | ||||| || |||||||| ||||||||| |||| || || | | || || || Sbjct 150018 --TAATAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCC 150074 Query 23391 TATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTT 23450 ||||| | ||| | | ||| ||| || | |||||| ||||| ||||| Sbjct 150075 TATTAAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTT 150134 Query 23451 AATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAA 23507 || || ||| || || |||| | || | ||| | | | ||| || | ||| Sbjct 150135 AACGATATTTTGTACCATTTGTTCTGGA--AGTTTATTATCTAATAAACTATAA-ATTAA 150191 Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 || |||||| ||||| |||||||| ||||| || ||||||||| |||||| || Sbjct 150192 GCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAA 150251 Query 23568 TCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGA 23626 || || ||| || | |||| |||| |||||| |||||| ||| || || | Sbjct 150252 ACCGTGTAATTTATTTT-GTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATA 150310 Query 23627 AAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAG 23686 | || || |||||| ||| || |||| | | | |||| | |||| |||| Sbjct 150311 ATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGA---ATTAGTATCAT 150367 Query 23687 AAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTT 23746 |||||||||| || ||| || || |||||| || |||| || || | Sbjct 150368 TAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCAT 150427 Query 23747 TTAAGAGAAAAGTTT----TTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTA 23802 || | || ||| |||||| | |||| | ||||| ||||||||| ||||||| Sbjct 150428 ----GAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 150483 Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 || |||| |||||||||||||| | ||| || ||||| |||||| | ||||||| Sbjct 150484 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCC 150543 Query 23863 GACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTA 23922 | | |||||| || | ||||| | |||| |||||||| || ||||||||||| Sbjct 150544 GTTATTTGAACCTCTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTT 150603 Query 23923 GCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT--AATTTTT 23980 || ||||| || || | |||| |||||||||||| | |||| || || ||||| | Sbjct 150604 GCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT--TTTCATTCAATTTCT 150661 Query 23981 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 |||| || | ||| | |||||||||| ||| || ||||||||||| Sbjct 150662 CAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAA 150711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521482935047800