Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq11 178 9e-40 >seq11 Length=775211 Score = 178 bits (196), Expect = 9e-40 Identities = 405/601 (67%), Gaps = 10/601 (2%) Strand=Plus/Plus Query 101669 AACTGCATTTTAAGAGCAT-CAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATG 101727 ||||| ||||| | ||| | ||| |||| ||| | ||||||| ||| | ||| Sbjct 160406 AACTGAATTTTTA-AGCTTTCAACATGATTATTATAAACATGAGCATTTCCCAATACATG 160464 Query 101728 GATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATA 101787 ||||| || | || || |||| || || || ||||| | || || | |||||| Sbjct 160465 TATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAAATATAGAATA 160524 Query 101788 GCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACA 101847 | |||||| |||||||| || || | ||| | |||| |||| |||||||| ||| Sbjct 160525 GGAAGCAATATTAAATGGAACACCAAGCCCTAAATCACAAGATCGTTGATACATAATACA 160584 Query 101848 GGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCAT 101907 || | ||||||||| | ||||||||||||| ||| | ||||||||| || || |||| Sbjct 160585 TGATAATTTTCCATCAAAAACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCAT 160644 Query 101908 TTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGT 101967 |||| | ||| |||||||| ||||||| | || | ||| ||| || | | Sbjct 160645 TTTATCTAAATCTTTTACATTCCATGCACACAAAATAATTCGCCTACATGTTGGATCGTT 160704 Query 101968 TTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATC-GCGCC 102026 ||| || || || | | |||||| || ||||| |||| |||||||||| || Sbjct 160705 TTTAATTAAATTGATAATATTTTTTAACTGATCAACACCTTTATCTTTATAATCAGCATG 160764 Query 102027 CAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGAT 102086 | | | || ||||||| || || || || ||||| ||||||||||| | || || |||| Sbjct 160765 C-ATATCTGTATATTCAGCACCAAAGTGTCTCCATTGAAATCCATAAATTGGGCCTAGAT 160823 Query 102087 C---TCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCG 102143 | |||| ||| || |||| || | ||||||||||| ||| | |||||| | Sbjct 160824 CATTAACTTC-TCTATGAAATAATTTCCTA--TTATCTAAAAACTCTCTTGTTCCATTAG 160880 Query 102144 CATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAA 102203 | ||||| || || | || ||| || | | || ||| || |||| Sbjct 160881 CTTCCCATATTCTTACATTTTTTTCTAATAATGTATTTCCATTTGTTTCTCCCCTTATAA 160940 Query 102204 ACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAA 102263 |||| || | ||||||| | |||||| ||||| | | || || ||||| | ||||| Sbjct 160941 ACCATAATAACTCTTCAATGATACCTCTTACAAATAATTTTTTTGTTGTTAATAATGGAA 161000 Query 102264 A 102264 | Sbjct 161001 A 161001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250909418566