Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9 379 2e-100 seq2 194 2e-44 >seq9 Length=1049758 Score = 379 bits (420), Expect = 2e-100 Identities = 976/1467 (67%), Gaps = 47/1467 (3%) Strand=Plus/Plus Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | |||||| Sbjct 572702 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 572761 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302 || || ||||||||||| | | | | |||||| | || | | || ||||| | | Sbjct 572762 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTT 572821 Query 53303 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 53359 |||| ||||||| |||| | ||| | |||| Sbjct 572822 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 572881 Query 53360 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 53416 | || || || || || | || | ||| ||||| || |||||||| || ||| | Sbjct 572882 AATATTCCTTTGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCATTTACTTGT-- 572938 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 53475 |||| ||| | | ||||| ||| | ||||| || || || || || ||||| ||| Sbjct 572939 GCTAACTCAACAGACATTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCT-ATT 572997 Query 53476 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 53533 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 572998 TAATTCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 573055 Query 53534 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 53593 |||||||| || || || || ||||| |||||||| ||||| || |||| |||||| | Sbjct 573056 AATCCTTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTA 573115 Query 53594 ATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACA 53653 || || |||||||| | || |||||||||| | ||||| ||| | ||| | | Sbjct 573116 ATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 573175 Query 53654 TCCTTCAGTTTGAGAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCA 53707 || | | ||| ||||| ||| || | ||||| ||||| | |||||| Sbjct 573176 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCA 573235 Query 53708 ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 53767 || || || ||||||||||| ||||| |||| || | ||||| | || ||| Sbjct 573236 ATTGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCACAA 573295 Query 53768 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 53827 || | ||||||||| || || ||||||||||||| ||||||| || || || ||| Sbjct 573296 CATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCA 573355 Query 53828 TCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAG 53887 || ||||| | || |||| |||||||||||| || || || || || ||| Sbjct 573356 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCAT 573415 Query 53888 ACGACACGAGCCTTTATTATAGATTTGTATCTC---TTTTCTCTTTCGTATAGTGTATAC 53944 | | | || | | | ||| | || | |||||| ||||||| |||||| Sbjct 573416 AAATCTTGTGC---AAGAACTGTTTTTTTTCCCAAATTTTCTGCTTCGTATTTTGTATAT 573472 Query 53945 AATCGTTCAAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACAT 54003 ||| |||||| || || |||| || ||| | || || || ||||||| || ||||| Sbjct 573473 AATTTTTCAAATTCTTCACCCC-AAGATTCACTTAAACCTGGGCATTCATTAGGGCACAT 573531 Query 54004 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 54063 || | ||| | | | ||||| |||| ||||||||| | |||||| | ||||| ||| Sbjct 573532 TAAAGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGC 573591 Query 54064 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123 ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | || Sbjct 573592 ATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAA 573651 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 | | |||||| || ||||| ||||| | |||| | || || | || || || Sbjct 573652 TTCAAAAATATCTGAGTGCCATGGTTCAATATATACAG-CAAAA---GAACCCTTTCTTT 573707 Query 54184 T----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 54239 | || || ||||||| ||||| || || | |||| ||||||| |||||||||| | Sbjct 573708 TTCCGCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTA 573767 Query 54240 TACCATTGGATGCACCATTGGTCCCGGAGATAT---AGCTTCCACTGGCACGAATATTAC 54296 |||||| ||| |||||| || || |||| | || || | | ||||| Sbjct 573768 AACCATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGAC---CTCTAATATCTT 573824 Query 54297 TAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 | | | |||||| || ||||| ||||| |||||||| ||| | ||||| || | Sbjct 573825 GTACAGCAACACCTATACCTCCTGCTGTTTTACTAATTAATGCACATTGCTTTAATGTTT 573884 Query 54357 CATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGG 54415 || | || || ||||| |||| |||| | ||| || ||| || |||||||||| Sbjct 573885 CAAATATACCTTCTATCGAATCAGATTTCATCGATAA-TAAAAAGCATGAAGACATTTGG 573943 Query 54416 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 54475 | | ||||||| ||||||||| || |||| ||| || ||||| |||||| ||| Sbjct 573944 GGCCTTGGTGTTCCCGAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGAC 574003 Query 54476 AGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGAC 54534 | || || || || || | ||| || | ||| || | ||| ||||||| | || Sbjct 574004 ATTAAATGATAAGTTTCTAAAGCCTTTTCAAGATCATCAAT-ATGTATTCCTATAGATAC 574062 Query 54535 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGA 54594 | |||||| | || ||||| | ||||| || || || || || | |||||||| Sbjct 574063 TCTCATTAATAAATGTTGAGGGCGTTCAATAATTTTATTATTAATACGTAATAAGTAGGA 574122 Query 54595 TTTTTCCAAAGTTTTAAAACCAAAATA 54621 | | || || |||||||| |||||||| Sbjct 574123 TCTCTCTAATGTTTTAAATCCAAAATA 574149 >seq2 Length=1775135 Score = 194 bits (214), Expect = 2e-44 Identities = 388/567 (68%), Gaps = 6/567 (1%) Strand=Plus/Plus Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| ||||| || || || |||||||||||||| || ||| || | ||| | Sbjct 183516 AAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCGTGT 183575 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 24259 | | ||||||||| ||||||||| | | |||| | | ||| ||| || ||||| Sbjct 183576 AATTTATTTTGCTTTTTAAACCAAAATATTG-CACAAAAGCTTCCACTAAATAATATTCC 183634 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTT 24319 ||| || ||| || | || |||||| || || | |||| |||||| || Sbjct 183635 TTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTTATCCATTT 183694 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 183695 AGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATT 183754 Query 24380 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 24439 | || || ||| |||| ||| ||||||| || | |||||| |||| || || Sbjct 183755 TAACCTCTCCTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTG 183814 Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 || ||||||| || |||||||| || || | |||| || | || ||||| || Sbjct 183815 TATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTC 183874 Query 24500 TATACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 | | ||||| | || || |||||||| |||||||| ||||| ||||||||||| | Sbjct 183875 TCTTAAAAATT-TACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATG 183933 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATA 24617 | || |||||||||||||||| |||||| | | ||| ||| ||| || || || | | Sbjct 183934 CTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAA 183992 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 || | |||| ||| | |||||| | ||||||||||| || || || |||||||| | | Sbjct 183993 TCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAA 184052 Query 24678 TTCCAGATGTCATGATATTGAATTGGA 24704 ||||| | ||| ||||| ||| ||| Sbjct 184053 TTCCATACTTCAGGATATATAATAGGA 184079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721110179680