Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq11 304 2e-77 seq9 194 3e-44 seq3 185 1e-41 >seq11 Length=775211 Score = 304 bits (336), Expect = 2e-77 Identities = 518/741 (70%), Gaps = 15/741 (2%) Strand=Plus/Plus Query 205348 GGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTA 205407 ||||| | | ||| || ||||||| | | || ||||||| ||| | ||| ||||| Sbjct 160394 GGTGTTCTATTTAACTGAATTTTTAAGCTTTCAACATGATTATTATAAACATGAGCATTT 160453 Query 205408 CC-AATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGT 205466 || |||| ||| ||||||||| ||||| ||||||| || ||||| |||||||| || Sbjct 160454 CCCAATAC-ATGTATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGT 160512 Query 205467 CAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTG 205526 |||| | ||| ||||| ||||||||| ||||| | || | |||| |||| ||| Sbjct 160513 AAATATAGAATAGGAAGCAATATTAAATGGAACACCAAGCCCTAAATCACAAGATCGTTG 160572 Query 205527 ATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACA-ATGAC 205585 |||||| ||||| | |||| || || |||| |||||| ||| || | ||||| Sbjct 160573 ATACATAATACATGATA---ATTTTCCATCAAAAACATAAAATTG-ACATAAAATATGAC 160628 Query 205586 AAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTC 205645 |||| |||| |||| || || | |||| | |||||| || || || || | Sbjct 160629 AAGGAGGTAATGCCATTTTATCTAAATCTTTTACATTCCATGCACACAAAATAATTCGCC 160688 Query 205646 TAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGAT 205705 || || || | ||||| ||| ||| ||||||| | |||| ||||||| |||| || Sbjct 160689 TACATGTTGGATCGTTTTTAATTAAATTGATAATATTTTTTAACTGATCAACACCTTTAT 160748 Query 205706 TTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCAT 205765 | |||||| | || |||||| |||||| ||||||||| || | ||||||||| |||| Sbjct 160749 CTTTATAATCAGCATGCATATCTGTATATTCAGCACCAAAGTGTCTCCATTGAAATCCAT 160808 Query 205766 AAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatatttta 205825 ||| ||| |||| |||| ||| ||||| | || | || | || | | | | Sbjct 160809 AAATTGGGCCTAGATCATTAACTTCTCTATGAAATAATTTCCTATTATCTAAAAACTCTC 160868 Query 205826 atgatccattttcatcccaaatatggattcctttattttttaGAAT--ATTTGTATTAGT 205883 || |||||| | ||||| ||| | | ||| ||| | | ||| |||| ||| || Sbjct 160869 TTGTTCCATTAGCTTCCCA--TATTCTTACATTTTTTTCTAATAATGTATTTCCATTTGT 160926 Query 205884 TGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGT 205943 | ||| ||||||||||||||| ||||||| || ||||| ||| | | |||||| Sbjct 160927 TTCTCCCCTTATAAACCATAATAACTCTTCAATGATACCTCTTACAAATAATTTTTTTGT 160986 Query 205944 TGTAAATAATGGAAATGAATCATCTAATTTATATTTCATAGTTAAACCATATACAGTTTT 206003 ||| ||||||||||| | ||| ||| ||| ||||||| | | ||| || | || Sbjct 160987 TGTTAATAATGGAAAATATTCACTTAAATTAAATTTCATCATATATCCAAATTTACTTAA 161046 Query 206004 TGTATCTACACCTGTTCTAT--TTTTGGTTATTCTTCCATTAGATAATATTTCTGATATA 206061 | | | ||||||||||||| | ||| |||| |||||| || ||| || ||||| Sbjct 161047 TACACCAACACCTGTTCTATCATCTTGTTTAT--TTCCATGCATTATTATATCATATATA 161104 Query 206062 CCTTTTAAATATTGATATTCA 206082 |||||||||||||||||| Sbjct 161105 ATATTTAAATATTGATATTCA 161125 >seq9 Length=1049758 Score = 194 bits (214), Expect = 3e-44 Identities = 210/272 (77%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAACCATCA 615767 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| || ||||||||||||||||||||||| ||||||||||| Sbjct 615766 GATACTATTGAAAATGTTAAAGCA-AAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 615708 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || || || |||||||||||||| ||| | |||||||| || ||||| Sbjct 615707 ACAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAA 615648 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || ||||||||||| ||||| || || |||||| | ||| |||||||||| ||| || Sbjct 615647 CATACAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGAGGTGGTATGCAAATCTT 615588 Query 124777 CATAAAAA--TTGATTGTAAATAAATATCACT 124806 |||||| || | || ||| || |||||| Sbjct 615587 TGTAAAAACTTTAACTGGAAA-AACAATCACT 615557 Score = 185 bits (204), Expect = 1e-41 Identities = 177/223 (79%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT-TTAAAACAG 124622 |||| ||||||||||| | || |||| || ||||| ||| ||| ||||| || Sbjct 616029 CAGGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCA- 615971 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||||||||||||||| || |||||||| ||||| | |||||||| |||||| Sbjct 615970 AAAATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCTGGAAAA 615911 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| ||| | |||||||| |||||||| || |||||||||||||| || ||| Sbjct 615910 CAATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACCTTACAT 615851 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAAAA 124784 || |||||| | ||| |||| ||||| ||| ||| |||||| Sbjct 615850 TTAGTTTTAAGATTAAGAGGAGGTATGCAAATTTTCGTAAAAA 615808 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| ||| |||| || ||||| || ||| | || |||| || Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA 615311 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||||||||||||||| ||||||||||| Sbjct 615310 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 615251 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| ||||||||||| || ||| | ||||| || |||||||| Sbjct 615250 CAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAAC 615191 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || |||||||||||||| || ||||| |||||| | ||| |||| ||| Sbjct 615190 ATACAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGAGGAGGT 615143 Score = 181 bits (200), Expect = 2e-40 Identities = 189/247 (77%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || |||| || ||||| || ||| | || ||||| || | Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||| |||||||||||||| || || ||||||||| Sbjct 615538 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAA 615479 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || ||||||||||| || || | |||||| || |||||||| Sbjct 615478 CAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATAAC 615419 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||||||||| || || ||||| |||||| | || |||| ||||| ||| ||| Sbjct 615418 ATTCAAAAAGAATCGACCTTACATTTAGTTTTAAGACTAAGAGGAGGTATGCAAATTTTC 615359 Query 124778 ATAAAAA 124784 |||||| Sbjct 615358 GTAAAAA 615352 >seq3 Length=1741454 Score = 185 bits (204), Expect = 1e-41 Identities = 169/211 (80%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 1503872 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1503813 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| ||| ||||| || ||||| |||||||||||||| || || ||||||| Sbjct 1503812 TGATACAATTGAAAATGTTAAAGCA-AAAATCCAAGATAAAGAAGGAATTCCCCCTGATC 1503754 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | ||||| || |||||||||||||| ||| | |||| ||| || |||| Sbjct 1503753 AACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTATA 1503694 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | ||||||||||||||||| || |||||||| Sbjct 1503693 ACATTCAAAAAGAATCAACCTTACATTTGGT 1503663 Score = 123 bits (136), Expect = 4e-23 Identities = 302/457 (66%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 202739 TATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATAT 202798 |||||| | ||| |||||| | |||||| |||||| |||| | | |||| ||||||| Sbjct 468317 TATTTTGTCATATATAAATTTATATCAAAATTACGTTTACAACTATTATAATCCATATAT 468376 Query 202799 CTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGAC 202858 | |||||| ||||| | ||| || ||||| | |||||||| ||| ||| || Sbjct 468377 CGAATTTTTCCAAAAACACTTCTCTCATTCCAACTTTGATCATGAACACCCATAATAGAT 468436 Query 202859 CACATACATCCAA-CATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAA 202917 |||| || || ||||| ||| | |||||| ||| || ||| || | |||| Sbjct 468437 GACATG-ATGGAAGCATATGTATTAGCTGTTTTTCCATCAATAGAAAATTCATTAGTTAA 468495 Query 202918 ATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGC 202977 | |||||| ||| | || || ||| | | |||||||| || Sbjct 468496 TTTAATTGCACATTTTAATGCTGCTTTAGAATTTTCTGACCAGTTCAGAATTTTTTTGGC 468555 Query 202978 CCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGC 203037 |||||||||||||||| || | || ||| |||| | | | | |||| ||| | Sbjct 468556 CCAATACATTCTTAAAAATTCGTGAATTGTACCTTCATTTACTAATTGTAATTGGCAACA 468615 Query 203038 ATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGAT-ATAAACTATATATATGTT 203096 |||||| | || | ||| || |||||| || | | |||| | ||||| ||| | Sbjct 468616 ATTCCAAATATCATTATGTGTCCTAGCATTTCGAAAATCTTCATAATC-ATATAAATGGT 468674 Query 203097 TTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTA 203156 | || | || | ||||| |||| | | ||||||||| ||||| ||||| | Sbjct 468675 TCCTTTTGTCTAACTCATGTTTTTTTAAACTCTCCTTTGCCCAATCCTTAGCTCCATTAA 468734 Query 203157 TATTATCGTAATTTTCATTATAATAACAAAAATTATC 203193 |||||| || || | |||||||||||||||||| || Sbjct 468735 AATTATCATAGTTCTTATTATAATAACAAAAATTGTC 468771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455376748800