Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq9 161 1e-34 seq3 150 3e-31 >seq9 Length=1049758 Score = 161 bits (178), Expect = 1e-34 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || |||||||| || |||||||| ||| |||||||| || Sbjct 615144 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615203 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || |||||||||||||||||||| |||||||||||||| || || Sbjct 615204 AGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGG 615263 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||||||| || || Sbjct 615264 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAACA 615323 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || ||||||||||| || ||||||||||| | ||| |||||||| Sbjct 615324 TCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 161 bits (178), Expect = 1e-34 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| || || ||||||||||||||||| ||| ||||| || || Sbjct 615600 CCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGAT 615659 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||||| ||| ||||||||||||||||| || || |||||||| ||||| || || Sbjct 615660 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGG 615719 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||||||| ||| || Sbjct 615720 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAACA 615779 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || ||||||||||| || ||||||||||| | ||| |||||||| Sbjct 615780 TCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 149 bits (164), Expect = 9e-31 Identities = 115/137 (84%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || |||||||| || |||||||| ||| |||||||| || Sbjct 615828 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615887 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 615888 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAGGG 615947 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 615948 ATACCTTCTTTATCTTG 615964 Score = 143 bits (158), Expect = 4e-29 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| |||||||| || |||||||| || |||||||| || |||||||| || Sbjct 615372 CCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAT 615431 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || || || ||||||||||| || ||||| |||||||| ||||| |||||| Sbjct 615432 AGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGA 615491 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| ||||| || ||| || Sbjct 615492 ATTCCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAACA 615551 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || ||||||||||| || ||||| ||||| | || |||||||| Sbjct 615552 TCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 >seq3 Length=1741454 Score = 150 bits (166), Expect = 3e-31 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || |||||||||||| || |||||||| || ||||| || || | |||||||| ||| Sbjct 1503659 TATTACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATC 1503718 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||| Sbjct 1503719 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 1503778 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| ||||| || ||| || || || |||||||| Sbjct 1503779 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 1503838 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 ||| || ||||||||||| | || ||||||||||| Sbjct 1503839 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1503874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743525786590720