Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 269 2e-67 >seq2 Length=1775135 Score = 269 bits (298), Expect = 2e-67 Identities = 621/916 (68%), Gaps = 31/916 (3%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT--T 15943 |||||||||| | | || |||||| || | |||||| | | | |||||| || | | Sbjct 183161 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAAC--ACCTGAT 183218 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || ||||||||||||||||||||| |||||||||| ||| || || Sbjct 183219 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTGTAAAGATATTAAG 183278 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAAC 16060 ||||| || ||| |||||||||||| | ||| || || || ||| || Sbjct 183279 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAA- 183337 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTAT 16119 ||||| ||| || |||||||| || || || ||| || || | |||||||| || Sbjct 183338 --TAATCGATCAGCAACAAATTCGATGTATTGAGACAT-AAGTCTTGAATTCATTCCAAT 183394 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| | | ||| | | ||| | ||| | |||||| | ||| ||||| | | Sbjct 183395 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 183454 Query 16180 TATATCTCTTACTACACTATT----TAACGGAGGGTTTAATAAGTGTTTAAACATTATAC 16235 ||||| ||| | | || || ||| | | ||| ||| || | |||| || Sbjct 183455 TATAT-TCTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGC---TATAAATTAAAC 183510 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 || |||||| || |||||||| |||||||| ||||| || || |||||| | || Sbjct 183511 AATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAAC 183570 Query 16296 C-TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 | || ||| | | | ||||||| ||||||||| || ||| ||| ||| ||| Sbjct 183571 CGTGTAATTTATTTT-GCTTTTTAAACCAAAATATTGCACAAAAGCTTCCACTAAATAAT 183629 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || ||||| || ||| || || | || ||| | | | |||| || | | Sbjct 183630 ATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGA---ATTTGTATCATTT 183686 Query 16415 atccattttttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||||| ||||| |||||| || |||| | | | || || || || |||| Sbjct 183687 ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGCATG 183745 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 |||||||| | || || ||| ||||||| |||| |||| ||||||||| | Sbjct 183746 AAATAAATTTAACCTCTCCTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGT 183805 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| || || ||||| || | ||||| |||||| |||||| | ||||||| ||| Sbjct 183806 TTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTAT 183865 Query 16594 TTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 |||||| || ||||| || || || || ||||| ||||||||||| ||||||| Sbjct 183866 TTGTACCTCTCT-TAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTG 183924 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC-GTTATCTGAAAGTTTTAACCAG 16711 ||||||| || | | ||||| ||||||| |||||| ||| | || |||| | || Sbjct 183925 CAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCA-AAG 183983 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTT 16771 || ||||| |||||||||| | ||||| |||||||||| || || |||| ||| Sbjct 183984 TCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTT 184043 Query 16772 TTATACATTTTCCATA 16787 ||||| | ||||||| Sbjct 184044 TTATAAAAATTCCATA 184059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511618427600