Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq11 205 7e-48 >seq11 Length=775211 Score = 205 bits (226), Expect = 7e-48 Identities = 409/602 (68%), Gaps = 8/602 (1%) Strand=Plus/Minus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| |||||||| || ||| ||||| | ||| | ||||||||||||||||| Sbjct 161001 TTTCCATTATTAACAACAAAAAAATTATTTGTAAGAGGTATCATTGAAGAGTTATTATGG 160942 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 ||||| | ||| ||||||| | | |||||||| || | || ||| Sbjct 160941 TTTATAAGGGGAGAAACAAATGGAAATACATTATTAGAAAAAAATGTAAGAATATGGGAA 160882 Query 20164 GCACATGGATCTAAGCAATTTTTACACA---GCAATGGATTTGACAACCGTCAAGAGGGG 20220 || ||||| | | | |||||| | | | || |||| | | | ||| Sbjct 160881 GCTAATGGAACAAGAGAGTTTTTAGATAATAGGAAATTATTTCATA---GAGAAGTTAAT 160825 Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280 ||| | || || | |||||||||||||||||||| ||||| ||||||||| || ||| Sbjct 160824 GATCTAGGCCCAATTTATGGATTTCAATGGAGACACTTTGGTGCTGAATATACAGATATG 160765 Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAA 20340 | | ||||| | |||| || ||||| ||| ||||| |||| |||||||||||| Sbjct 160764 CATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATCAATTTAATTAAA 160705 Query 20341 A-CGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTT 20399 | ||| || | | | || |||||||||| || || ||||| | |||||| | | Sbjct 160704 AACGATCCAACATGT-AGGCGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATAA 160646 Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 |||||| || ||||| |||||||| |||| |||||||| ||| | || |||| || Sbjct 160645 AATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTATC 160586 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||| |||||||||||||| |||| | || || |||||||| || |||||||| Sbjct 160585 ATGTATTATGTATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCATTTAATATTGCTTC 160526 Query 20520 TTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGT 20579 ||| | | |||| |||||||| ||||| || ||||| || | | ||| || | Sbjct 160525 CTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAATTTAT 160466 Query 20580 CCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTT 20639 || | ||| | || ||| |||| ||||||| | ||| |||||| | ||||| Sbjct 160465 ACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGCTTAAAAATTCAGTT 160406 Query 20640 AA 20641 || Sbjct 160405 AA 160404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183678906370