Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2 253 2e-62 >seq2 Length=1775135 Score = 253 bits (280), Expect = 2e-62 Identities = 630/936 (67%), Gaps = 33/936 (4%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 183162 TAAAAATCAGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 183221 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||| ||||||||||| |||||||| |||| | ||||| ||| Sbjct 183222 TGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTGTAAAGATATTAAGTCC 183281 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 14032 || || |||||||||| |||| || ||||| |||||||| |||||||| Sbjct 183282 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAATA-- 183339 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 14091 ||| ||| |||| || || || ||||||||||| || || ||||||| || |||| Sbjct 183340 -ATCGATCAGCAACAAATTCGATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 183397 Query 14092 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | ||| | | ||| || |||| | |||||| || || || || | | Sbjct 183398 ATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 183456 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACG 14207 || || || || || | | | | |||||| | | | | | |||||||||| Sbjct 183457 TATTCTGAACAACCTCTTCTG--GTAATTTATTTTCTAACAAGCT-ATAAATTAAACAAT 183513 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 14266 |||||| || | || ||||| |||||||| | ||| || ||||||||| || | Sbjct 183514 TAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCGT 183573 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 | || || | | ||||| ||||||||||||||| || ||| ||| |||||| Sbjct 183574 GTAATTTATTTT-GCTTTTTAAACCAAAATATTGCACAAAAGCTTCCACTAAATAATATT 183632 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 || || || ||| |||| | || ||| |||| || | | | || |||| Sbjct 183633 CCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATT---TATC 183689 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 ||||| |||||| | ||| ||||| || || |||||||||||| |||| Sbjct 183690 CATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAAT 183749 Query 14447 AAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14504 |||| | | |||| | | | ||| ||| || ||||||| | ||| ||||| ||| Sbjct 183750 AAATTTAACCTCTCCTTCTCATCCTT--AATATAATTATCAATTAATAAACTATATGTTT 183807 Query 14505 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14564 |||||||||| ||||| | |||||| |||||| |||||| | ||||||| || Sbjct 183808 CAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTT 183867 Query 14565 GTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14624 |||||||| ||||| | ||||||||||| ||||| |||||||||||||||| Sbjct 183868 GTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAA 183927 Query 14625 AAAATGCCA--ATATGTTTTTAATAAAGTATTGC-TCTTCATTGCTGAGTTTTTTCCAA- 14680 ||||||| | | ||||||| | || || || | | | |||| | | |||||| || Sbjct 183928 AAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATT--TAA--TTTTTCAAAG 183983 Query 14681 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTT 14740 || ||||| | || | ||||| ||| ||| | |||||||| || |||||||| Sbjct 183984 TCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTT 184043 Query 14741 TTATACATTACCCATATTTCTTTATATAATATAGGA 14776 ||||| | ||||| ||| ||||| |||||| Sbjct 184044 TTATAAAAATTCCATACTTCAGGATATATAATAGGA 184079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345202064880