Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq9 111 1e-19 >seq3 Length=1741454 Score = 123 bits (136), Expect = 2e-23 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | |||||||||||||||||||| ||||| | | ||| | | |||||| Sbjct 1503662 TACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTC 1503721 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||| || || | || | |||||||||||| ||| | ||||| ||||| Sbjct 1503722 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1503781 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| |||| || || | | ||| || ||| || || |||| ||||| ||| Sbjct 1503782 GATTT-TTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 1503840 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT--TAAAC 18333 | ||||| |||||||||||||| ||||||||||| ||||| Sbjct 1503841 TTCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAAC 1503881 >seq9 Length=1049758 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||||||||| ||||| || || | | |||| | | ||||||||||||||| || Sbjct 615174 GTTGATTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCATCTTCCAATTGTTTTCCA 615233 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | |||||| ||||| || | ||||| ||||| ||||| | || || Sbjct 615234 GCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAATTT-TAGCTTT 615292 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || ||||| || | ||||| |||| ||||| ||||| Sbjct 615293 AACATTTTCAATAGTATCTGATGGCTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGT 615352 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||| ||||||||||| Sbjct 615353 TTTTACGAAAATTTGCAT 615370 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| ||||| ||||| | | |||| | | |||||| |||||||| || Sbjct 615630 GTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCA 615689 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || |||| | |||||||||||| || | ||||| ||||| ||||| |||| || Sbjct 615690 GCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTT-TTGCTTT 615748 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || || || || | ||||| |||| ||||| ||||| Sbjct 615749 AACATTTTCAATAGTATCTGATGGTTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGT 615808 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||| ||||||||||| Sbjct 615809 TTTTACGAAAATTTGCAT 615826 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | |||||| | || | || | || ||||||||||||||||| || || | Sbjct 615372 CCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAT 615431 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | |||||||||||||| || || | || | |||||||||||| || Sbjct 615432 AGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGA 615491 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| |||| | || || || | | ||| || ||| || || Sbjct 615492 ATTCCTTCTTTATCTTGGATTT-TAGCTTTAACATTTTCAATGGTATCAGATGGTTCAAC 615550 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| |||| || || || ||||||||||| |||||||| Sbjct 615551 ATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343694865170