Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9 396 3e-105 seq2 174 2e-38 >seq9 Length=1049758 Score = 396 bits (438), Expect = 3e-105 Identities = 975/1460 (67%), Gaps = 33/1460 (2%) Strand=Plus/Plus Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | |||||| Sbjct 572702 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 572761 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62540 || || ||||||||||| | | | | |||||| | || | | || ||||| | | Sbjct 572762 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTT 572821 Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAA---CANNNNNNNNNNNATATTGT 62597 |||| ||||||| |||| | ||| || | ||||| Sbjct 572822 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 572881 Query 62598 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCC--TTCCTTCTCA 62654 | || || || || || | || | ||| ||||| ||||||||||| || ||| | Sbjct 572882 AATATTCCTTTGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCATTTACTTGT-- 572938 Query 62655 GCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGAT-CTTCTTATT 62713 |||| | | | | ||||| ||| | ||||| || || ||||| || ||||| ||| Sbjct 572939 GCTAACTCAACAGACATTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCT-ATT 572997 Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62773 || |||| ||||| ||| ||||||| |||| || ||||| | || ||||| Sbjct 572998 TAATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 573057 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 |||||| || || || || ||||| |||||||| ||||| || |||| |||||| ||| Sbjct 573058 TCCTTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTAAT 573117 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62893 || |||||||| | || |||||||||| | |||||| ||| | ||| | ||| Sbjct 573118 TGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 573177 Query 62894 CTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGCAAC 62947 | | ||| ||||| ||| | ||||| ||||| | ||||||| Sbjct 573178 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 573237 Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 || || |||||||| || ||||| |||| || | ||||| | || ||| || Sbjct 573238 TGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCACAACA 573297 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 | ||||||||| || || ||||||||||||| ||||||| || || || ||||| Sbjct 573298 TAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATC 573357 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||||| | || |||| |||||||||||| ||| || || || || ||| | Sbjct 573358 TTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 573417 Query 63128 GACTCGAGCCTTTATTATAGATTTGTATCTC---CTTTCTCTTTCGTATAGAGTATACAA 63184 || | || | | | ||| | || | ||||| ||||||| ||||| || Sbjct 573418 ATCTTGTGC---AAGAACTGTTTTTTTTCCCAAATTTTCTGCTTCGTATTTTGTATATAA 573474 Query 63185 TCGTTCGAACTCGTCTCCCCAAACATTGTC-CAATCTAGGACATTCATCCGGACACATCA 63243 | ||| || || || |||| || ||| | || | || ||||||| || ||||| | Sbjct 573475 TTTTTCAAATTCTTCACCCC-AAGATTCACTTAAACCTGGGCATTCATTAGGGCACATTA 573533 Query 63244 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63303 | | ||| | | | ||||| |||| ||||||||| | |||||| | ||||| ||| Sbjct 573534 AAGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCAT 573593 Query 63304 TAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63363 ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | || Sbjct 573594 AAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATT 573653 Query 63364 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63423 | | |||||| || ||||| ||||| | |||| || | | || | ||| | Sbjct 573654 CAAAAATATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTCCGC 573713 Query 63424 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63483 | || ||||||| ||||| || || | |||| ||||||| |||||||||| | ||| | Sbjct 573714 CACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCAT 573773 Query 63484 TTGATATACCATTGGTACCGGAGATAT-AGCCTCCACTG-GCACGAATATTACTAATTGA 63541 ||||||||||||| || || |||| || | || | | ||||| | | Sbjct 573774 TTGATATACCATTAGTTCCTCTAATATAAGAAT--TTTGACCTCTAATATCTTGTACAGC 573831 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | |||||| || ||||| ||||| |||||||| ||| | ||||| || ||| | || Sbjct 573832 AACACCTATACCTCCTGCTGTTTTACTAATTAATGCACATTGCTTTAATGTTTCAAATAT 573891 Query 63602 GCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 |||||||| |||| |||| | ||| || ||| || |||||||||| | | | Sbjct 573892 ACCTTCTATCGAATCAGATTTCATCGATAA-TAAAAAGCATGAAGACATTTGGGGCCTTG 573950 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 ||||||| ||||||||| || |||| ||| || ||||| |||||| ||| | || || Sbjct 573951 GTGTTCCCGAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAAT 574010 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATT 63779 || || || | ||| || | ||| || | ||| ||||||| | || | |||| Sbjct 574011 GATAAGTTTCTAAAGCCTTTTCAAGATCATCAAT-ATGTATTCCTATAGATACTCTCATT 574069 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 || | || ||||| | ||||| |||||| || || || || ||||||||| | || Sbjct 574070 AATAAATGTTGAGGGCGTTCAATAATTTTATTATTAATACGTAATAAGTAGGATCTCTCT 574129 Query 63840 AAAGTTTTAAAACCAAAATA 63859 || |||||||| |||||||| Sbjct 574130 AATGTTTTAAATCCAAAATA 574149 >seq2 Length=1775135 Score = 174 bits (192), Expect = 2e-38 Identities = 367/542 (68%), Gaps = 4/542 (1%) Strand=Plus/Plus Query 33603 CCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33662 || || || |||||||||||||| ||| ||| || | ||| | | | ||||| Sbjct 183531 CCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCGTGTAATTTATTTTGCTTT 183590 Query 33663 TTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 |||| ||||||||| | | || ||| ||| || |||||||| || ||| Sbjct 183591 TTAAACCAAAATATTGCACAAAAGCTTCCACTAAATAATATTCCTTCGACACATGCATTA 183650 Query 33723 GCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | || ||| || || || | |||| |||||| || ||||| || Sbjct 183651 GCTACAATTCTTTCAGCAAAAGAATTTGTATCATTTATCCATTTAGCTGCCCATAATGCT 183710 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 33842 || ||||||| || || |||| || |||| ||| | || | || || | Sbjct 183711 TTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAACCTCTCCTTCTCA 183770 Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || |||| |||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 183771 TCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCT 183830 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || ||||| || || | |||| || | || || || ||| | ||||| | || Sbjct 183831 ATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATT-TACT 183889 Query 33963 -GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 || |||||||| |||||||||||||| ||||||||||| || || ||||||||||| Sbjct 183890 AGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTAT 183949 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATCCA 34080 ||||| |||||| | | ||| ||| ||| || || || | ||| | |||| ||| | Sbjct 183950 AAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTA 184008 Query 34081 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 34140 |||||| | ||||||||||| || || || |||||||| | |||||| | ||| ||| Sbjct 184009 TTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGAT 184068 Query 34141 AT 34142 || Sbjct 184069 AT 184070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817080400480