Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9 592 2e-164 seq2 266 3e-66 >seq9 Length=1049758 Score = 592 bits (656), Expect = 2e-164 Identities = 1204/1759 (68%), Gaps = 48/1759 (3%) Strand=Plus/Plus Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCC 36996 || || || || |||| | || || ||||| || | |||| |||||| || ||| Sbjct 572465 TGGTCGATGAAAACACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCC 572524 Query 36997 CAAACCGTTTTATATATTTGTTTTATATTATCT-GGTAAATC--TAA-ATGTTGAATAGA 37052 ||||| |||||||| | || ||| | | | || |||| || ||| || ||||| | Sbjct 572525 CAAACTGTTTTATACAATTCTTTCA-AGTCGCTAGGTATTTCACTAATATATTGAACACT 572583 Query 37053 ACCATTATGTAACAC-AATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTA 37111 |||||||| | |||||| | || || || | || ||| | | |||| | | Sbjct 572584 TCCATTATGGGCAATTAATTGTTGT-TTCATATCTTCATCCCAAAGACCTCTATCAAAAA 572642 Query 37112 GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTAT 37171 | ||| | || | || ||||| ||||| || || ||| ||| || | ||| || Sbjct 572643 GATCTTTTAACAAATGAGGATTGACAACAAAGAATTCACCACTTAAAACACGTCTGTAAT 572702 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 | || || || ||||||||||||| ||| |||||||| | ||| ||||| || || || | Sbjct 572703 AAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAG 572762 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT 37291 | || ||||| ||||||| ||||| |||||| |||||||| || | ||| | |||| Sbjct 572763 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 572822 Query 37292 TTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAAC----CACATATCATATTGT 37347 ||| | || ||||||||| | || | || | |||| | ||||||||| ||||| Sbjct 572823 TTAATAAATCCCAATCCCA-ATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 572881 Query 37348 AGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCT 37407 | || ||||| || |||||| | | | ||||| ||||| ||||| | | || ||| Sbjct 572882 AATATTCCTTTGCTTGCTGGACTACCTTGATATGATTCATATGGTCCATTTACTTGTGCT 572941 Query 37408 AGTTCGCAACTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464 | || ||| ||| ||||| || |||||||| || || || || ||| | ||||| Sbjct 572942 AACTC--AAC-AGACATTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCTATTT 572998 Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524 ||| ||| ||||| || || ||| ||| | || | ||||| ||| || || Sbjct 572999 AATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 573058 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 || || || || || || || || |||||| | ||||| ||||| | |||| | | | Sbjct 573059 CCTTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTAATT 573118 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATT 37644 || |||||||| | || || ||||||| || |||| || | ||||| ||||| || Sbjct 573119 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAAT-ATC 573177 Query 37645 CTCAACTTGTCGAACAT-AAATACGTTATT------ATTAACAAATTTACTCAACGAAAT 37697 | | || | || || |||| | || || || ||||||||||| || | ||| Sbjct 573178 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 573237 Query 37698 AGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTAC 37756 || |||||||||| ||||| |||||||| || | || ||| | ||| || || Sbjct 573238 TGAAGCTAGATTACAAACAGCTACTTCATCAG-GTGATGTATATTCAACAATTTCACAAC 573296 Query 37757 AGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAAT 37816 | | |||||| || |||||||||| ||||| ||||||| ||||| ||| || | || Sbjct 573297 ATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCAT 573356 Query 37817 CTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATA 37876 ||||||||| ||||| || || ||| |||||| | | |||| ||||| Sbjct 573357 CTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATA 573416 Query 37877 AACTTCTTGCTTTAACGATCGCTTTAAttt------ttttCTTTGTTTCGTATTCTATAT 37930 || ||||| | | || | ||| ||| |||||| | |||||||| | ||| Sbjct 573417 AA--TCTTG--TGCAAGAACTGTTTTTTTTCCCAAATTTTCT--GCTTCGTATTTTGTAT 573470 Query 37931 ATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACA 37990 ||||||| | ||| || | ||||| || | ||| ||||| ||||| || |||| Sbjct 573471 ATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAAACCTGGGCATTCATTAGGGCACA 573530 Query 37991 TTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATG 38050 ||| || ||| | || || || | ||| | || ||||||||||||||||||||| | | Sbjct 573531 TTAAAGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAG 573590 Query 38051 CAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAA 38110 || ||||||||| | ||| ||||||| || || ||| |||||||| || || Sbjct 573591 CATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAA 573650 Query 38111 AATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTAT 38170 | || || ||||| | |||||||||||| ||||| | | | | || |||||| Sbjct 573651 ATTCAAAAATATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTC 573710 Query 38171 CACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATAC 38230 | || || |||| | |||||| |||| | |||| | | ||||||||| || |||| || Sbjct 573711 CGCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAAC 573770 Query 38231 CATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCG 38290 |||| ||| | || || | || ||||||| | | | ||| |||| ||| | Sbjct 573771 CATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGACCTCTAATAT--CTTGTAC 573828 Query 38291 A-CAAT-CCTATTCCACCTGCATGTTTTGATA-TTAAAGCGCATTGTTTTAACGTATCAA 38347 | ||| ||||| || ||||| |||||| || |||| || ||||| ||||| || |||| Sbjct 573829 AGCAACACCTATACCTCCTGC-TGTTTTACTAATTAATGCACATTGCTTTAATGTTTCAA 573887 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 ||||||||||||| ||| || || | || || ||| || ||||||||| ||| Sbjct 573888 ATATACCTTCTATCGAATCAGATTTCATCGATAATAAAAAGCATGAAGACATTTGGGGCC 573947 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 ||| ||||| | ||||||||||| |||| ||||| | || |||||| |||| Sbjct 573948 TTGGTGTTCCCGAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATTA 574007 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 ||| ||| ||||||| | | || | |||| | || || |||| |||||| |||| Sbjct 574008 AATGATAAGTTTCTAAAGCCTTTTCAAGATCATCAATATGTATTCCTATAGATACTCTCA 574067 Query 38528 TTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT-CTGTTTAAGTAGATACGATTTT 38586 ||| | |||||| || | ||| || ||||||||||| | ||| || || ||| | Sbjct 574068 TTAATAAATGTTGAGGGCGTTCAATAATTTTATTATTAATACGTAA-TAAGTAGGATCTC 574126 Query 38587 TCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATGCTATTACATTA 38646 ||||||||||| | |||||||||| ||| | ||||||| || ||||| | ||| Sbjct 574127 TCTAATGTTTTAAATCCAAAATAATCATAATTAAAATCTCTTGTATAATCTATTTCTTTA 574186 Query 38647 TCGATTATATCTCTATGTT 38665 | | |||| |||||| Sbjct 574187 TTTAAACGATCTTTATGTT 574205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||||||| ||||| |||| || | ||| | || ||||| | || || ||| ||| Sbjct 572126 TCAACTGTAAATTTAATAGCATCCGTTGCTGCTTGAGTTCTTAAGTAGTATGCTCCGGTT 572185 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || | |||||||||||| |||||||||| | ||||||| ||||||| || Sbjct 572186 TTTAAACCTTTTTCCCATCCGTAAAAGTGCATACTGGATAATTTTGCGAATGTAGGTTTT 572245 Query 36910 TCTATATATATTGTCATTGATTGA 36933 | ||| || || | | ||||||| Sbjct 572246 TGTATGTAAATATTTAATGATTGA 572269 >seq2 Length=1775135 Score = 266 bits (294), Expect = 3e-66 Identities = 649/962 (67%), Gaps = 21/962 (2%) Strand=Plus/Plus Query 11249 aattatttattcaactttataaaa-attat---taattaaaaatctatatccgtagaaaa 11304 |||| ||||| ||||||| | | ||||| | ||||||||| | | |||||| Sbjct 183126 AATTTTTTAT-CAACTTTTTTATGTATTATATTTTCTTAAAAATCAGTGTTTAAAGAAAA 183184 Query 11305 ta--tattCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT 11362 || | |||| |||||| |||||| || |||||||| || ||||| | Sbjct 183185 TACTTGTTCTTTTCTTTGAGCCATAACACCTG-AT-TTTTGATAATCTGCAACTCTCTTT 183242 Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || || |||||||| || |||| || ||||| | ||||| | ||||| ||||| | | Sbjct 183243 TCAAAGAAATTAGTTTTTCCTTGTAAAGATATTAAGTCCATCCAACTAAATGGATTTTTT 183302 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || ||| ||||| ||||||||| | |||||||| ||| || || ||||| || Sbjct 183303 GAATGGAAAACTTTGGAACAACCTAAACATTCTAATAATCGATCAGCAACAAATTCGATG 183362 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 || |||||||| | | ||||||| || || | ||| || | || | | |||| Sbjct 183363 TATTGAGACATAAGTCTTGAATTCATTCCAATTAAATCACAAGGTAAAG--ATTCACAAA 183420 Query 11543 -AACTCCT-TTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATG 11600 || | | |||||| | ||| || || | | ||| | | ||| || | | | Sbjct 183421 TAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATATTCTGAACAACCTCTTCTGGTA 183480 Query 11601 GTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTC 11660 | || | ||| || | |||||||| |||||| ||||| ||||| || | Sbjct 183481 ATTTATTTTCTAACAAGCTATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCCC 183540 Query 11661 TACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA-TCAATCCTCGtttttttATCCAA 11719 |||| |||| ||||||| ||||||||| ||| | | | || | | ||||| | |||| Sbjct 183541 TACTAATTAATTCATTACTAAATGTTAAACCGTGTAATTTATTTT-GCTTTTTAAACCAA 183599 Query 11720 AATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACT 11779 ||||| ||| ||| ||| ||| |||||||| || ||| |||| ||||| | | Sbjct 183600 AATATTGCACAAAAGCTTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATT 183659 Query 11780 CTTTCTCCATAT-ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838 ||||| || | | |||| | | ||||||||| ||||| ||||| ||||| Sbjct 183660 CTTTCAGCAAAAGAATTTGTATC-ATTTATCCATTTAGCTGCCCATAATGCTTTATTTTT 183718 Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTAC 11898 || | || |||| ||||| | |||||||| | | || | | ||| | | Sbjct 183719 TATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAACCTCTCCTTCTCATCCTTAAT 183778 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||| |||| |||||||||||||| |||| || || |||||||| | |||||||||||| Sbjct 183779 ATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAA 183838 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACT-GTACATCCACATAAAATCTTTCC-GCTAAA 12016 ||| |||| | | || | | | |||| || | ||||| || | || ||| Sbjct 183839 AGAATA-AAACTTTTTAGCTTCAATTATTTGTACCTCT-CTTAAAAATTTACTAGCCAAA 183896 Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 || || ||| || |||||||||| |||||||||||||| | |||||||||||| | | Sbjct 183897 TTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGT 183956 Query 12077 TTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCA 12136 ||||| | | | ||||||| || | || | ||||| |||||||||||| ||||||| Sbjct 183957 TTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCA 184016 Query 12137 ACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATA 12196 | |||||||| || | | || |||||| | ||||| | ||| |||| ||||| Sbjct 184017 GCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATATATAATA 184076 Query 12197 GG 12198 || Sbjct 184077 GG 184078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524413467040