Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 392 4e-104 seq2 194 2e-44 >seq9 Length=1049758 Score = 392 bits (434), Expect = 4e-104 Identities = 975/1463 (67%), Gaps = 39/1463 (3%) Strand=Plus/Plus Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | |||||| Sbjct 572702 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 572761 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 65333 || || ||||||||||| | | | | |||||| | || | | || ||||| | | Sbjct 572762 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTT 572821 Query 65334 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 65390 |||| ||||||| |||| | ||| | |||| Sbjct 572822 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 572881 Query 65391 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 65447 | || || || || || | || | ||| ||||| || |||||||| || ||| | Sbjct 572882 AATATTCCTTTGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCATTTACTTGT-- 572938 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 65506 |||| ||| | | ||||| ||| | ||||| || || || || || ||||| ||| Sbjct 572939 GCTAACTCAACAGACATTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCT-ATT 572997 Query 65507 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 572998 TAATTCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 573055 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 |||||||| || || || || ||||| |||||||| ||||| || |||| |||||| | Sbjct 573056 AATCCTTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTA 573115 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 || || |||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 573116 ATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 573175 Query 65685 TCCTTCAGTTTGAGAAAATCAAA-----TCGCTCATCTAT-TACAAACATGTTCAATGCA 65738 || | | ||| ||||| ||| | | ||||| ||||| | |||||| Sbjct 573176 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCA 573235 Query 65739 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 65798 | || || ||||||||||| ||||| |||| || | ||||| | || ||| Sbjct 573236 ATTGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCACAA 573295 Query 65799 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 65858 || | ||||||||| || || ||||||||||||| ||||||| || || || ||| Sbjct 573296 CATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCA 573355 Query 65859 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 65918 || ||||| | || |||| |||||||||||| ||| || || || || ||| Sbjct 573356 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCAT 573415 Query 65919 ACGACTCGAGCCTTTATTATAGATTTGTATCTC---TTTTCTCTTTCGTATAGTGTATAC 65975 | || | || | | | ||| | || | |||||| ||||||| |||||| Sbjct 573416 AAATCTTGTGC---AAGAACTGTTTTTTTTCCCAAATTTTCTGCTTCGTATTTTGTATAT 573472 Query 65976 AATCGTTCGAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACAT 66034 ||| ||| || || || |||| || ||| | || || || ||||||| || ||||| Sbjct 573473 AATTTTTCAAATTCTTCACCCC-AAGATTCACTTAAACCTGGGCATTCATTAGGGCACAT 573531 Query 66035 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 66094 || | ||| | | | ||||| |||| ||||||||| | |||||| | ||||| ||| Sbjct 573532 TAAAGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGC 573591 Query 66095 TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 66154 ||||||||| | | ||| ||| || || || ||| ||| | | ||| | || Sbjct 573592 ATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAA 573651 Query 66155 CGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 66214 | | |||||| | ||||| ||||| | |||| || | | || | ||| Sbjct 573652 TTCAAAAATATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTCC 573711 Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 || || ||||||| ||||| || || | |||| ||||||| |||||||||| | ||| Sbjct 573712 GCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACC 573771 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATAT---AGCTTCCACTTGCACGAATATTACTAAT 66331 ||| ||| ||||||| || || |||| | || || | | ||||| | Sbjct 573772 ATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGAC---CTCTAATATCTTGTAC 573828 Query 66332 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 66391 | | |||||| || ||||| ||||| |||||||| ||| | ||||| || ||| | Sbjct 573829 AGCAACACCTATACCTCCTGCTGTTTTACTAATTAATGCACATTGCTTTAATGTTTCAAA 573888 Query 66392 GATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGAC 66450 || || ||||| |||| |||| | ||| || ||| || |||||||||| | | Sbjct 573889 TATACCTTCTATCGAATCAGATTTCATCGATAA-TAAAAAGCATGAAGACATTTGGGGCC 573947 Query 66451 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 66510 ||||||| ||||||||| || |||| ||| || ||||| |||||| ||| | || Sbjct 573948 TTGGTGTTCCCGAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATTA 574007 Query 66511 GATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGC 66569 || || || || | ||| || | ||| || | ||| ||||||| | || | | Sbjct 574008 AATGATAAGTTTCTAAAGCCTTTTCAAGATCATCAAT-ATGTATTCCTATAGATACTCTC 574066 Query 66570 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 66629 ||||| | || ||||| | ||||| || || || || || || ||||||||| | Sbjct 574067 ATTAATAAATGTTGAGGGCGTTCAATAATTTTATTATTAATACGTAATAAGTAGGATCTC 574126 Query 66630 TCCAAAGTTTTAAAACCAAAATA 66652 || || |||||||| |||||||| Sbjct 574127 TCTAATGTTTTAAATCCAAAATA 574149 >seq2 Length=1775135 Score = 194 bits (214), Expect = 2e-44 Identities = 388/567 (68%), Gaps = 6/567 (1%) Strand=Plus/Plus Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| ||||| || || || |||||||||||||| || ||| || | ||| | Sbjct 183516 AAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCGTGT 183575 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 36282 | | ||||||||| ||||||||| | | |||| | | ||| ||| || ||||| Sbjct 183576 AATTTATTTTGCTTTTTAAACCAAAATATTG-CACAAAAGCTTCCACTAAATAATATTCC 183634 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 36342 ||| || ||| || | || ||| || || || | |||| |||||| || Sbjct 183635 TTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTTATCCATTT 183694 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 183695 AGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATT 183754 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 | || || ||| |||| ||| ||||||| || | |||||| |||| || || Sbjct 183755 TAACCTCTCCTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTG 183814 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 || ||||||| || |||||||| || || | |||| || | || ||||| || Sbjct 183815 TATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTC 183874 Query 36523 TGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 36581 | | ||||| | || || |||||||| |||||||| ||||| ||||||||||| | Sbjct 183875 TCTTAAAAATT-TACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATG 183933 Query 36582 CCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA-TCATTGATA 36640 | || |||||||||||||||| |||||| ||| ||| ||| ||| || || || | | Sbjct 183934 CTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAA 183992 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 || | |||| ||| | |||||| | ||||||||||| || || || |||||||| | | Sbjct 183993 TCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAA 184052 Query 36701 TTCCAGATGTCATGATATTGAATTGGA 36727 ||||| | ||| ||||| ||| ||| Sbjct 184053 TTCCATACTTCAGGATATATAATAGGA 184079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172257007440