Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9 468 7e-127 seq2 179 5e-40 >seq9 Length=1049758 Score = 468 bits (518), Expect = 7e-127 Identities = 998/1464 (68%), Gaps = 41/1464 (3%) Strand=Plus/Plus Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152 ||||| ||||| ||||||||||| | |||||||||||||| |||||||| | |||||| Sbjct 572702 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 572761 Query 79153 GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG-AT-CTGATTTTAT 79210 || |||||||||||||| | | | | |||||| | || ||| || || ||||| | Sbjct 572762 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCC--ATGCATACTTATTTTTT 572819 Query 79211 CTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAA---CATTCCAAAGATCATATT 79267 ||||| | |||||||||||| | | || ||||||| | |||| ||| Sbjct 572820 TTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATT 572879 Query 79268 GTAGAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCC--TTCCTTTT 79324 ||| || || || || || | | | | || |||| |||||| ||||| || ||| | Sbjct 572880 GTAATATTCCTTTGCTTGCTGGACTACCTTGA-TATGATTCATATGGTCCATTTACTTGT 572938 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAAT-CTTCTTA 79383 ||||| ||| | | ||||| || | ||||| || || || || || ||||| | Sbjct 572939 --GCTAACTCAACAGACATTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCT-A 572995 Query 79384 TTGAGATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 79442 || | |||| ||||| | | | ||| ||||||| |||| || ||||| | ||||| Sbjct 572996 TTTAATTCTTTAGCTTCATCAGAT-TCATATGGATATCTTAAAAGCATAAATGTATCTGC 573054 Query 79443 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGG 79502 ||||||||| || || || || ||||| |||||||| ||||| || |||| |||||| Sbjct 573055 TAATCCTTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTT 573114 Query 79503 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGA-CCA 79561 ||| || |||||||| | || |||||||||| | ||| || | || || ||| | | Sbjct 573115 AATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAA 573173 Query 79562 CATCCTTTAGTTTGAGAAAATCAAA-----TCGTCCATCTAT-TACAAACATGTTCAACG 79615 ||| | || ||| ||||| ||| | | ||||| ||||| | || | Sbjct 573174 TATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATG 573233 Query 79616 CGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAG 79675 | | || || ||||||||||| ||||| |||| || | ||||| | |||||| Sbjct 573234 CAATTGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCAC 573293 Query 79676 TGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 79735 || | |||||||| ||||| ||||||||||||| ||||||| || || || | Sbjct 573294 AACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATG 573353 Query 79736 CATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 79795 |||| ||||| | || | || |||||||||||| ||| || || || || || Sbjct 573354 CATCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACC 573413 Query 79796 AGACGACTCGAGCCTTTATTATAGACTTGTATCTC---TTTTCTCTTTCGTATTGTGTAT 79852 | | || | || | | | || | || | |||||| |||||||| ||||| Sbjct 573414 ATAAATCTTGTGC---AAGAACTGTTTTTTTTCCCAAATTTTCTGCTTCGTATTTTGTAT 573470 Query 79853 ATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACA 79912 ||||| ||| || || || |||||| || ||| || || ||||| | ||| |||| Sbjct 573471 ATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAAACCTGGGCATTCATTAGGGCACA 573530 Query 79913 TCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972 | || | ||| | | || |||||||||| ||||||||| | |||||| | ||||| || Sbjct 573531 TTAAAGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAG 573590 Query 79973 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 80032 | ||||| ||| | | ||| || || || || ||| ||| | | ||| | | Sbjct 573591 CATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAA 573650 Query 80033 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGT 80092 | | | |||||| || ||||| ||||| | |||| || | | ||| || ||| Sbjct 573651 ATTCAAAAATATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTC 573710 Query 80093 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 80152 || || ||||||| ||||| || || | |||| ||||||| |||||||||| | || Sbjct 573711 CGCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAAC 573770 Query 80153 CATTGGATGTACCATTGGTCCCGGAGATAT---AGCTTCCACTGGCACGAATATTACTAA 80209 |||| ||| ||||||| || || |||| | || || | | ||||| | Sbjct 573771 CATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGAC---CTCTAATATCTTGTA 573827 Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269 | | |||||| || ||||| ||||| |||||||| ||| | ||||| || ||| Sbjct 573828 CAGCAACACCTATACCTCCTGCTGTTTTACTAATTAATGCACATTGCTTTAATGTTTCAA 573887 Query 80270 AGATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || ||||| |||| |||| | ||| || ||| || |||||||||| | Sbjct 573888 ATATACCTTCTATCGAATCAGATTTCATCGATAA-TAAAAAGCATGAAGACATTTGGGGC 573946 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 | ||||||| ||||||||| || |||| ||| || ||||| |||||| ||||| | Sbjct 573947 CTTGGTGTTCCCGAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATT 574006 Query 80389 AGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACG 80447 | || || || || | ||| ||| | ||| || | ||| ||||||| | || | Sbjct 574007 AAATGATAAGTTTCTAAAGCCTTTTCAAGATCATCAAT-ATGTATTCCTATAGATACTCT 574065 Query 80448 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTT 80507 |||||| | || ||||| | ||||| || || ||||| || || ||||| ||| | Sbjct 574066 CATTAATAAATGTTGAGGGCGTTCAATAATTTTATTATTAATACGTAATAAGTAGGATCT 574125 Query 80508 TTCCAAAGTTTTAAAACCAAAATA 80531 || || |||||||| |||||||| Sbjct 574126 CTCTAATGTTTTAAATCCAAAATA 574149 >seq2 Length=1775135 Score = 179 bits (198), Expect = 5e-40 Identities = 335/487 (69%), Gaps = 4/487 (1%) Strand=Plus/Plus Query 50036 GCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCCTTCTACTGCG 50094 ||||||||| ||||||||| | | |||| | ||| ||| || |||||||| || Sbjct 183586 GCTTTTTAAACCAAAATATTG-CACAAAAGCTTCCACTAAATAATATTCCTTCGACACAT 183644 Query 50095 GCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAA 50154 ||| || |||| ||| || || || | |||| |||||| || ||||| Sbjct 183645 GCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTTATCCATTTAGCTGCCCAT 183704 Query 50155 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 50214 || || ||||||| || || |||| || |||| ||| | || | || Sbjct 183705 AATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAACCTCTCC 183764 Query 50215 TTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 50274 || ||| |||| |||| |||| || || | |||||| |||| || || || |||||| Sbjct 183765 TTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCA 183824 Query 50275 ATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAAT 50334 | || || ||||| || || | |||| || | || || || ||| | ||||| Sbjct 183825 ACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAAT 183884 Query 50335 CGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGT 50394 ||| |||||||| |||||||| ||||| ||||||||||| || || |||||| Sbjct 183885 TTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGT 183944 Query 50395 TTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATAT 50453 ||||||||||||||||| || ||| ||| ||| || || || | ||| | |||| Sbjct 183945 TTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAA 184003 Query 50454 ATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 50513 ||||| |||||| | ||||||||||| || || || |||||||| | |||||| | || Sbjct 184004 ATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTC 184063 Query 50514 ATGATAT 50520 | ||||| Sbjct 184064 AGGATAT 184070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268207428240