Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 262 4e-65 >seq2 Length=1775135 Score = 262 bits (290), Expect = 4e-65 Identities = 663/986 (67%), Gaps = 33/986 (3%) Strand=Plus/Plus Query 13476 AACaa-aaaaaGTTGTTATTTATT--CAACTTTATAATATTCAATAAAAACT-AAAAATC 13531 ||||| ||||| || | |||| || ||||||| | || | ||| || ||||||| Sbjct 183110 AACAACAAAAAATTCTAATTTTTTATCAACTTTTTTATGTATTATATTTTCTTAAAAATC 183169 Query 13532 AACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTC 13591 | | ||| ||||| || | || | | | | || ||||| || ||||||||| || Sbjct 183170 AGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTTTGATAATC 183229 Query 13592 ACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATC 13651 |||||| ||||||||||| |||||||| |||| | ||||| ||||| || Sbjct 183230 TGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTGTAAAGATATTAAGTCCATCCAACT 183289 Query 13652 AAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAATAGTAATCTATC 13708 |||||||||| |||| || ||||| |||||||| |||||||| ||| ||| Sbjct 183290 AAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAATA---ATCGATC 183346 Query 13709 AGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGTTTTACAG 13767 ||||| ||| || || ||||||||||| || || ||||||| || |||| | || Sbjct 183347 AGCAACAAATTCGATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAAATCACAAG 183405 Query 13768 GAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTA 13826 | | | ||| || |||| | |||||| || || ||||| | ||| | | Sbjct 183406 GTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATATTCTGA 183464 Query 13827 ATAATCTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACGCAAAATCA 13883 | || ||| | | | | |||||| | | | | | |||||||||| |||||| Sbjct 183465 ACAACCTCTTCTG--GTAATTTATTTTCTAACAAGCT-ATAAATTAAACAATTAAAATCT 183521 Query 13884 CAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAA 13942 || | || ||||| |||||||| | ||| || ||||||||| || || || | Sbjct 183522 GTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCGTGTAATTTA 183581 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 | | | ||||| ||||||||||||||| ||| || ||| |||||||| || || Sbjct 183582 TTTT-GCTTTTTAAACCAAAATATTGCACAAAAGCTTCCACTAAATAATATTCCTTCGAC 183640 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 ||| |||| | || ||| |||| || | | | || ||||||||| Sbjct 183641 ACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATT---TATCCATTTAGC 183697 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 |||||| | ||| ||||| || || |||||||||||| |||||||| | Sbjct 183698 TGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAA 183757 Query 14123 CTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14180 | |||| | | | ||| ||| || ||||||| | ||| ||||| ||||||||||| Sbjct 183758 CCTCTCCTTCTCATCCTT--AATATAATTATCAATTAATAAACTATATGTTTCAGAGTGT 183815 Query 14181 ATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC 14240 || ||||| | |||||| |||||| |||||| | ||||||| |||||| || Sbjct 183816 ATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCT 183875 Query 14241 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14300 ||||| | ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 183876 CTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCT 183935 Query 14301 AATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAA-TCGGATAAAT 14358 || | | ||| ||||| | || || || | || | |||||| || || |||| Sbjct 183936 AACACATGTTTTATAAAATGTTTTTCATTTACATTTAA--TTTTTCAAAGTCTTTCAAAT 183993 Query 14359 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTA 14418 | | || | ||||| ||| ||| | |||||||| || ||||||||||||| | Sbjct 183994 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAAT 184053 Query 14419 CCCATATTTCTTTATATAATATAGGA 14444 ||||| ||| ||||| |||||| Sbjct 184054 TCCATACTTCAGGATATATAATAGGA 184079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727604224400