Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 244 1e-59 >seq2 Length=1775135 Score = 244 bits (270), Expect = 1e-59 Identities = 655/979 (67%), Gaps = 32/979 (3%) Strand=Plus/Plus Query 13270 AAAAGTTGTTATTTATT--CAACTTTATAATATTTAATAAAAACT-AAAAATCAACATCT 13326 |||| || | |||| || ||||||| | || | | ||| || |||||||| | | Sbjct 183117 AAAAATTCTAATTTTTTATCAACTTTTTTATGTATTATATTTTCTTAAAAATCAGTGTTT 183176 Query 13327 AATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACT 13386 || ||||| || | || | | | | || ||||| || ||||||||| || |||| Sbjct 183177 AAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTTTGATAATCTGCAACT 183236 Query 13387 CTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGA 13446 || |||||||| || |||||||| |||| | ||||| ||||| || |||||| Sbjct 183237 CTCTTTTCAAAGAAATTAGTTTTTCCTTGTAAAGATATTAAGTCCATCCAACTAAATGGA 183296 Query 13447 TTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAAC 13506 ||| |||| || ||||| |||||||| | |||||||| |||||||| ||| Sbjct 183297 TTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAATAATCGATCAGCAACAAAT 183356 Query 13507 TCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGTTTTACAGGAATTATATT 13565 || || ||||||||||| || || ||||||| || |||| | ||| | | ||| Sbjct 183357 TCGATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAAATCACAAGGTAA-AGATT 183414 Query 13566 AGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCAT 13624 || |||| | |||||| || || || || | ||| ||| || || || | Sbjct 183415 CACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATATTCTGAACAACCTCTT 183474 Query 13625 TAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681 | | | |||||| | | | | | |||||||||| |||||| || | | Sbjct 183475 CTG--GTAATTTATTTTCTAACAAGCT-ATAAATTAAACAATTAAAATCTGTGTGTAATC 183531 Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGtttt 13740 | ||||| |||||||| | ||| || ||||||||| || || || || | | ||| Sbjct 183532 CTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCGTGTAATTTATTTT-GCTTT 183590 Query 13741 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800 || ||||||||||||||| || ||| ||| |||||||| || || ||| Sbjct 183591 TTAAACCAAAATATTGCACAAAAGCTTCCACTAAATAATATTCCTTCGACACATGCATTA 183650 Query 13801 GCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCATTTTCTAGCCCATT 13858 |||| | || ||| |||| || ||||| | || |||||||| |||||| Sbjct 183651 GCTACAATTCTTTCAGCAAAAGAA-----TTTGTATCATTTATCCATTTAGCTGCCCATA 183705 Query 13859 CAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTT 13918 | ||| ||||| || || |||| || |||| ||||||| | | |||| | Sbjct 183706 ATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAACCTCTCCT 183765 Query 13919 TAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTC 13976 | | ||| ||| || ||||||| | ||| ||||| ||||||||||||| ||||| Sbjct 183766 TCTCATCCTT--AATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTC 183823 Query 13977 TATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAA 14036 | |||||| |||||| |||||| | ||||||| |||||||| | ||||| Sbjct 183824 AACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCT-CTCTTAAAA 183882 Query 14037 TCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGT 14095 || || ||||| ||||| || || ||||||||||||||||||||||| || | | Sbjct 183883 ATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACAT 183942 Query 14096 TTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAA-TCGGCTAAATCCTTAGA 14153 ||| ||||| | || || || | || | |||||| || || ||||| | || Sbjct 183943 GTTTTATAAAATGTTTTTCATTTACATTTAA--TTTTTCAAAGTCTTTCAAATCACTTGA 184000 Query 14154 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14213 | ||||| ||| ||| | |||||||| || ||||||||||||| | ||||| Sbjct 184001 TAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATAC 184060 Query 14214 TTCTTTATATAATATAGGA 14232 ||| ||||| |||||| Sbjct 184061 TTCAGGATATATAATAGGA 184079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588405164240