Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9 428 6e-115 seq2 179 5e-40 >seq9 Length=1049758 Score = 428 bits (474), Expect = 6e-115 Identities = 982/1461 (67%), Gaps = 35/1461 (2%) Strand=Plus/Plus Query 71176 TAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 71235 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | |||||| Sbjct 572702 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 572761 Query 71236 GCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCT 71295 || || ||||||||||| | | ||| |||||| | ||||| | ||||| | | Sbjct 572762 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTT 572821 Query 71296 TTTAGAGATTCCCAATTCCAA-AGATCCGATGGTACAA---CNNNNNNNNNNNNNNNNNN 71351 |||| | ||||||| |||| | | || ||| | Sbjct 572822 TTTAATAAATCCCAATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTG 572880 Query 71352 NNNNATGCCGTTACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGG 71410 || || || || || | | | | || ||||| || |||||||| | | || | Sbjct 572881 TAATATTCCTTTGCTTGCTGGACTACCTTG-ATATGATTCATATGGTCCATTTACTTGTG 572939 Query 71411 CTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAAT-CTTCTTATTG 71469 ||| ||| | | ||||| || ||||||| || || || || || ||||| ||| Sbjct 572940 CTAACTCAACAGACATTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCT-ATTT 572998 Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529 | |||| ||||| ||| ||||||| |||| || ||||| | ||||||||| Sbjct 572999 AATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 573058 Query 71530 CCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATA 71589 ||||| || || || || ||||| || ||||| ||||| || |||| |||||| ||| Sbjct 573059 CCTTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTAATT 573118 Query 71590 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGA-CCACATC 71648 || |||||||| | || |||||||||| | |||||| | || || ||| | | ||| Sbjct 573119 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATC 573177 Query 71649 CTTTAGTTTGAGAAAATCAAA-TCTCCCATCTAT-TACAAACACGTT----CAAGGCAAC 71702 | || ||| ||||| ||| ||| | | | || |||| || || |||| Sbjct 573178 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 573237 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 || || ||||||||||| ||||| |||| || | ||||| | ||||||| || Sbjct 573238 TGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCACAACA 573297 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 | ||||||||| || || ||||||||||||| ||||||| || || || ||||| Sbjct 573298 TAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATC 573357 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 ||||| | ||| | || |||||||||||| ||| || || || || ||| | Sbjct 573358 TTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAA 573417 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTC---TTTTCTCTTTCGTATTGTGTATATAA 71939 || | || | | | || || || | |||||| |||||||| ||||||||| Sbjct 573418 ATCTTGTGCAAGAACTGTTTTTTT---TCCCAAATTTTCTGCTTCGTATTTTGTATATAA 573474 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATTGTC-TAATCCAGGACATTCATTCGGACACATCA 71998 | ||| || || || ||||||| ||| | ||| || || |||||||| || ||||| | Sbjct 573475 TTTTTCAAATTCTTCACCCCAAG-ATTCACTTAAACCTGGGCATTCATTAGGGCACATTA 573533 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 | | ||| | | || || ||||||| ||||||||| | |||||| | ||||| ||| Sbjct 573534 AAGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCAT 573593 Query 72059 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 ||||| ||| | | ||| || || || || ||| ||| | | ||| | || Sbjct 573594 AAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATT 573653 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | |||||| || ||||| ||||| | |||| || | | ||| | ||| | Sbjct 573654 CAAAAATATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTCCGC 573713 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 | || ||||||| ||||| || || | |||| ||||||| |||||||||| | ||||| Sbjct 573714 CACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCAT 573773 Query 72239 TGGATGCACCATTGGTCCCGGAGATAT---AGCTTCCACTGGCACGAATATTGCTAATTG 72295 | ||| |||||| || || |||| | || || | | ||||| | | Sbjct 573774 TTGATATACCATTAGTTCCTCTAATATAAGAATTTTGAC---CTCTAATATCTTGTACAG 573830 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 | |||||| || ||||| ||||| |||||||| ||| | ||||| || ||| | | Sbjct 573831 CAACACCTATACCTCCTGCTGTTTTACTAATTAATGCACATTGCTTTAATGTTTCAAATA 573890 Query 72356 TGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 | || ||||| |||| |||| | ||| || ||| || |||||||||| | | Sbjct 573891 TACCTTCTATCGAATCAGATTTCATCGATAA-TAAAAAGCATGAAGACATTTGGGGCCTT 573949 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 ||||||| ||||||||| || |||| ||| || ||||| |||||| ||||| || | Sbjct 573950 GGTGTTCCCGAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAA 574009 Query 72475 TTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCAT 72533 | || || || | ||| ||| | ||| || | ||||||||||| | || | ||| Sbjct 574010 TGATAAGTTTCTAAAGCCTTTTCAAGATCATCAAT-ATGTATTCCTATAGATACTCTCAT 574068 Query 72534 TAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTC 72593 ||| | ||| ||||| | ||||| || || ||||| || || ||||||||| | || Sbjct 574069 TAATAAATGTTGAGGGCGTTCAATAATTTTATTATTAATACGTAATAAGTAGGATCTCTC 574128 Query 72594 CAAAGTTTTAAAACCAAAATA 72614 || |||||||| |||||||| Sbjct 574129 TAATGTTTTAAATCCAAAATA 574149 >seq2 Length=1775135 Score = 179 bits (198), Expect = 5e-40 Identities = 373/550 (68%), Gaps = 4/550 (1%) Strand=Plus/Plus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 || ||||| |||||||||||||| || ||| || | ||| | | | ||||| Sbjct 183531 CCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCGTGTAATTTATTTTGCTTT 183590 Query 42146 TTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAA 42204 |||| ||||||||| | | |||| | | ||| ||| || |||||||| || ||| Sbjct 183591 TTAAACCAAAATATTG-CACAAAAGCTTCCACTAAATAATATTCCTTCGACACATGCATT 183649 Query 42205 GGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGC 42264 || | || ||| || || || | |||| |||||| || ||||| || Sbjct 183650 AGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTTATCCATTTAGCTGCCCATAATGC 183709 Query 42265 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 42324 || ||||||| || || |||| || |||| ||| | || | || || Sbjct 183710 TTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAACCTCTCCTTCTC 183769 Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 ||| |||| ||| |||| || || | |||||| |||| || || || ||||||| || Sbjct 183770 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAACAGC 183829 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || ||||| || || | | || || | | ||||| ||| | ||||| Sbjct 183830 TATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAATTTACT 183889 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 ||| |||||||| |||||||| ||||| ||||||||||| || || ||||||||||| Sbjct 183890 AGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTAT 183949 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAA-TCATTGATATCTTTAGATATATCTA 42563 ||||| |||||| | ||||||| ||| || || || | ||| | |||| ||||| Sbjct 183950 AAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATCTA 184008 Query 42564 CTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGAT 42623 |||||| | ||||||||||| ||||| || |||||||| | |||||| | ||| ||| Sbjct 184009 TTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGAT 184068 Query 42624 ATTGAATTGG 42633 || ||| || Sbjct 184069 ATATAATAGG 184078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138646310160