Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq9 132 5e-26 seq3 93.3 4e-14 >seq9 Length=1049758 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||||||||||| | || ||||||||||||||||| ||||| Sbjct 615144 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615203 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| |||||| | || | | ||||||||| || || Sbjct 615204 AGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGG 615263 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | ||| | || || | || || || Sbjct 615264 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAACA 615323 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || || ||||| |||||||||||||| ||||||||| || Sbjct 615324 TCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATACCT 615374 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||||| || | |||||||||||||||||||| || || Sbjct 615600 CCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGAT 615659 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| ||||| |||| | | ||| ||||| || || Sbjct 615660 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGG 615719 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||||| ||| | | ||| | || || | ||||| || Sbjct 615720 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAACA 615779 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || || ||||| |||||||||||||| ||||||||| || Sbjct 615780 TCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATACCT 615830 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | ||||||||||| | || ||||||||||| ||||| |||| | Sbjct 615372 CCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAAT--CAG 615429 Query 143018 ATTGTGCTCG--AGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || ||| ||| |||||| | |||||| || || | || | | ||| ||||| |||| Sbjct 615430 ATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAG 615489 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || |||||||| || ||||| ||| | | ||| | || || | ||||| | Sbjct 615490 GAATTCCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAA 615549 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | |||| ||| | || || || || || |||||||| || ||||||||| Sbjct 615550 CATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCATA 615599 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||||||||||| | || ||||||||||||||||| ||||| Sbjct 615828 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615887 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| |||||| | || | | ||||||||| ||||| Sbjct 615888 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAGGG 615947 Query 143078 ATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||||| || ||||||| Sbjct 615948 ATACCTTCTTTATCTTGAATTTTT 615971 >seq3 Length=1741454 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | || ||||||||||| ||||| || || | || || ||||| Sbjct 1503663 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 1503722 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| ||||| | || | | ||| ||||| || || || |||||||| || Sbjct 1503723 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1503782 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 |||||| ||| | | ||| | || || | ||||| || |||| ||| | || || Sbjct 1503783 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1503842 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||||||||||| || |||||||| Sbjct 1503843 CCGGTTAATGTTTTTACAAAGATTTGCAT 1503871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013981713120