Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9 149 5e-31 seq3 125 5e-24 >seq9 Length=1049758 Score = 149 bits (164), Expect = 5e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||||||||||||||| | ||| || |||||||| ||||| ||||| | Sbjct 615372 CCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAT 615431 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| ||||||| |||||||| || ||| | || || | |||||| || ||| Sbjct 615432 AGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGA 615491 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || ||||| ||| || ||| |||| |||||||| ||| || Sbjct 615492 ATTCCTTCTTTATCTTGGATTTTAGCT-TTAACATTTTCAATGGTATCAGATGGTTCAAC 615550 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || || ||||| || || | |||||||||||| ||||||||| Sbjct 615551 ATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCATA 615599 Score = 145 bits (160), Expect = 6e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||||||||||||| || | || || |||||||||||||| || || | Sbjct 615600 CCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGAT 615659 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| |||||| | || || | |||||| || ||| Sbjct 615660 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGG 615719 Query 15257 ATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || || ||||||| || ||| |||| || ||||| ||| || Sbjct 615720 ATACCTTCTTTATCTTGAATTTTTGCT-TTAACATTTTCAATAGTATCTGATGGTTCAAC 615778 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || || ||||| || || | |||||||| |||||||||||| Sbjct 615779 ATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATA 615827 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| | ||| || |||||||||||||| ||||| | Sbjct 615144 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615203 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| |||||||| ||||| | || || | ||| || || ||| Sbjct 615204 AGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGG 615263 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || |||||| ||| || ||| |||| || ||||| || || Sbjct 615264 ATACCTTCTTTATCTTGAATTTTAGCT-TTAACATTTTCAATAGTATCTGATGGCTCAAC 615322 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || || ||||| || || | |||||||| |||||||||||| Sbjct 615323 ATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATA 615371 Score = 125 bits (138), Expect = 5e-24 Identities = 151/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| | ||| || |||||||||||||| ||||| | Sbjct 615828 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615887 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| ||||| | || || | ||| || || || Sbjct 615888 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAGGG 615947 Query 15257 ATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || || ||||||| || ||| |||| ||||||||| || || Sbjct 615948 ATACCTTCTTTATCTTGAATTTTTGCT-TTAACATTTTCAATGGTATCGGATGGCTCAAC 616006 Query 15316 ATCTAAGGTAATGGTTTTACCTG 15338 ||| | ||| || ||||| |||| Sbjct 616007 ATCAAGGGTTATAGTTTTTCCTG 616029 >seq3 Length=1741454 Score = 125 bits (138), Expect = 5e-24 Identities = 172/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||| || |||||||| ||||| || || || | |||| | |||||| Sbjct 1503663 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 1503722 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACA 15273 |||||||| |||||| | || || | |||||| || |||||||||||||| || Sbjct 1503723 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1503782 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 | ||||||| || ||| |||| || ||||| ||| ||||| | || || ||||| Sbjct 1503783 ATTTTTGCT-TTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1503841 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA--TAAAATTTTAATACTT 15388 || || | ||||||||||| |||||||| || | ||| ||||| | |||| || Sbjct 1503842 TCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTAAAAAGTAAATAATT 1503898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178908672106