Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq9 107 2e-18 seq3 100 2e-16 >seq9 Length=1049758 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| || || || ||||||| || ||||||||||||||||| ||||| Sbjct 615144 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615203 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || ||| |||| | || || ||||| || Sbjct 615204 AGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGG 615263 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| || ||| || || Sbjct 615264 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAACA 615323 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 615324 TCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || || || || |||| |||||||||||||||||||| || || Sbjct 615600 CCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGAT 615659 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| |||||||| || || | || | || |||||||| || Sbjct 615660 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGG 615719 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||||||| ||| || | ||| || ||| ||||| Sbjct 615720 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAACA 615779 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 615780 TCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || || || || ||||||| || ||||||||||| ||||| |||| | Sbjct 615372 CCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAAT--CAG 615429 Query 20042 ATAGTTTTAG--AATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||||| || | |||||||||||||| || || |||| | || |||||||| | Sbjct 615430 ATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAG 615489 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||||| ||| || | ||| | ||| ||||| Sbjct 615490 GAATTCCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAA 615549 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| || || || ||||| ||||| |||||||| Sbjct 615550 CATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| || || || ||||||| || ||||||||||||||||| ||||| Sbjct 615828 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615887 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| |||||||| || ||| |||| | || || ||||| || Sbjct 615888 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAGGG 615947 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCAC 20133 | |||||||| || ||||||| ||| || Sbjct 615948 ATACCTTCTTTATCTTGAATTTTTGCTTTAAC 615979 >seq3 Length=1741454 Score = 100 bits (110), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||||| || ||||||||||| ||||| || || | |||| | |||||| Sbjct 1503663 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 1503722 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || |||| | || |||||||| ||| | |||||||| || Sbjct 1503723 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1503782 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||| || | ||| | ||| ||||| || | || || ||||| Sbjct 1503783 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1503842 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTT--TAAAC 20216 ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 1503843 CCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAAC 1503881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419586862494546