Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 242 3e-59 >seq2 Length=1775135 Score = 242 bits (268), Expect = 3e-59 Identities = 610/911 (67%), Gaps = 21/911 (2%) Strand=Plus/Plus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGA--CATAACAGACATT 12859 |||||||||| | | || ||||||||| | || | || ||||| ||||||| | Sbjct 183161 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTT--TTCTTTGAGCCATAACACCTGAT 183218 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| |||||||| || || |||||||||| ||| || || Sbjct 183219 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTGTAAAGATATTAAG 183278 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| || || |||||||| ||| | ||| ||| ||||| | ||| Sbjct 183279 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAAT 183338 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCCTATTAA 13038 |||| ||||||||||| || ||||| || ||| || || | |||||||| ||||| Sbjct 183339 AATCGATCAGCAACAAATTCGATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 183397 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||| | || ||| | ||| | |||||| ||||||||||| ||||||| Sbjct 183398 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 183457 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGG---ATTTGATAG-ATGCTTAAACATCATACATG 13154 | ||| | || |||| ||| |||| || | ||| || || | ||| Sbjct 183458 AT-TCTGA--ACAACCTCTTCTGGTAATTTATTTTCTAACAAGCTATAA-ATTAAACAAT 183513 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||||| ||| ||||||||||| ||||| |||| || || |||||||| ||| Sbjct 183514 TAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCGT 183573 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 | | | | ||||||| ||||||||| ||| ||| || ||| ||||||| Sbjct 183574 GTAATTTATTTTGCTTTTTAAACCAAAATATTGCACAAAAGCTTCCACTAAATAATATTC 183633 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCC 13334 |||| || |||| |||| | |||||| || | | | ||| || | ||||| Sbjct 183634 CTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAA---TTTGTATCATTTATCC 183690 Query 13335 ACTTTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 | || ||||| |||||| || |||| || | | |||||||| || || | |||| Sbjct 183691 ATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGCATGAAAT 183749 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 |||| | ||||| || ||||||| |||| || ||||| ||||| |||| Sbjct 183750 AAATTTAACCTCTCCTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCA 183809 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 || || |||||||| | |||||||| ||| |||||| | |||| || || || Sbjct 183810 GAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGT 183869 Query 13514 ACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 || || ||||| || || || || ||||| ||||| || |||||||| ||||| Sbjct 183870 ACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAA 183928 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGG 13632 ||| || | | || || ||||| | |||||| ||| | || ||| | ||| Sbjct 183929 AAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTT 183988 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 ||||| |||||||||||| || ||| | |||||||| || || |||| || ||||| Sbjct 183989 CAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATA 184048 Query 13693 CATCATCCATA 13703 | |||||| Sbjct 184049 AAAATTCCATA 184059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982053328532