Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 205 2e-47 seq9 203 7e-47 seq2 116 9e-21 >seq3 Length=1741454 Score = 205 bits (226), Expect = 2e-47 Identities = 173/213 (81%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | |||||| || |||||||| ||||| ||||||||||||| |||||| || ||||| Sbjct 1503662 TACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTC 1503721 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || |||||||||||| ||||||| || ||||||||||| || |||||||||||||| || Sbjct 1503722 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1503781 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || |||||||| |||||||| | ||||| ||||| || || || || || || || Sbjct 1503782 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1503841 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | |||||||||||| || |||||||| Sbjct 1503842 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1503874 >seq9 Length=1049758 Score = 203 bits (224), Expect = 7e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || | |||| |||||| || |||||||| ||||| ||||| ||| Sbjct 615369 ATACCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCA 615428 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||| |||||||| | ||||||||| || ||||||| || |||||||||||| Sbjct 615429 GATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGA 615488 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| || || || ||||| |||||||| | |||||| ||||| Sbjct 615489 GGAATTCCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCA 615548 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || ||||| | ||||||||||| || ||||| Sbjct 615549 ACATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 190 bits (210), Expect = 5e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| ||||| ||||||||||| || || ||||||||| Sbjct 615597 ATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCA 615656 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||||| |||||||||||| || |||| || ||||||||||| Sbjct 615657 GATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGT 615716 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| ||||| |||||||| |||||||| | ||||| ||||| Sbjct 615717 GGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCA 615776 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || || | ||||||||| || || ||||| Sbjct 615777 ACATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 183 bits (202), Expect = 7e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||| || |||||||| || || ||||| ||| Sbjct 615825 ATACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCA 615884 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||||| |||||||||||||||||||| || || ||||||||| Sbjct 615885 GATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGA 615944 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| ||||| |||||||| |||||||| | ||||||| || || Sbjct 615945 GGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGGTATCGGATGGCTCA 616004 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || || || || ||||| || || | ||| Sbjct 616005 ACATCAAGGGTTATAGTTTTTCCTGAAAG 616033 Score = 179 bits (198), Expect = 9e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| |||||| || |||||||| || || ||||| |||||| Sbjct 615144 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGAT 615203 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || ||||| || ||||| | |||||||||||||||||||| || || |||||||| || Sbjct 615204 AGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGG 615263 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||||||||| ||||| || ||||| |||||||| | ||||| || || || Sbjct 615264 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAACA 615323 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || | ||||||||| || || ||||| Sbjct 615324 TCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 >seq2 Length=1775135 Score = 116 bits (128), Expect = 9e-21 Identities = 372/566 (66%), Gaps = 12/566 (2%) Strand=Plus/Minus Query 268734 TATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGT 268793 |||||| | || ||| | || | || || |||||||||| |||||| ||||| | | Sbjct 184059 TATGGAATTTTTATAAAAAAGCTGAAGCCTCATTTTGGACTGCTGAAGAAATAGATTTAT 184000 Query 268794 CTTATGACTTAATAGA-TTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTAT 268852 | ||| || | ||| || |||||||| ||| | | |||| | |||||| || Sbjct 183999 CAAGTGATTTGAAAGACTTTGAAAAATT-AAATGTAAATGAAAAACATTTTATAAAACAT 183941 Query 268853 ATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAG-TAGAGAAGTT 268911 | | || |||||||||| ||||||||| || || |||||| | | ||| || || Sbjct 183940 GTGTTAGCATTTTTTGCAGCTAGTGATGGAATAGTATTAGAAAATTTGGCTAGTAAATTT 183881 Query 268912 CTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 | | |||||||| || |||||| | | ||||| || || |||||| | || Sbjct 183880 TTAAGA-GAGGTACAAATAATTGAAGCTAAAAAGTTTTATTCTTTTCAAATAGCTGTTGA 183822 Query 268972 AAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGA 269031 |||||| || || || | || ||| ||||||| |||| |||||| | ||| | || || Sbjct 183821 AAATATACACTCTGAAACATATAGTTTATTAATTGATAATTATATTAAGGATGAGAAGGA 183762 Query 269032 AAAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATG 269091 | | || ||||| | |||| || ||| | | ||| ||| | ||| Sbjct 183761 GAGGTTAAATTTATTTCATGCTATTGAAAATATACCAGCAATAAAAAATAAAGCATTATG 183702 Query 269092 GGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGC 269151 ||| ||||||||||| |||| ||| | ||||| | || ||| ||| Sbjct 183701 GGCAGCTAAATGGATAAATGATACAAATTCTTTTGCTGAAAGAATTGTAGCTAATGCATG 183642 Query 269152 TGTAGAAGGTATATTCTTT-TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA--AAG 269208 ||| ||||| ||||| ||| || |||||| || || |||||||| || || || Sbjct 183641 TGTCGAAGGAATATTATTTAGTGGAAGCTTTTG-TGCAATATTTTGGTTTAAAAAGCAAA 183583 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 | ||| | || ||||| || ||| ||||| || || ||||| ||||| ||||| Sbjct 183582 ATAAATTA--CACGGTTTAACATTTAGTAATGAATTAATTAGTAGGGATGAAGGATTACA 183525 Query 269269 CTGCGACTTCGCTTGTTTATTATTTA 269294 | || || ||||||| ||||| Sbjct 183524 CACAGATTTTAATTGTTTA--ATTTA 183501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397426348728