Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq10 239 5e-58 seq11 197 2e-45 seq15 84.2 3e-11 >seq10 Length=780440 Score = 239 bits (264), Expect = 5e-58 Identities = 480/710 (68%), Gaps = 19/710 (3%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| ||||| |||||| | || |||| | | ||||| ||||||| || || Sbjct 86980 AATTTTAATTTCGAAGAATTAGGTATAGGAGCATTAGATGAAGAATTTAAAACAATATTT 86921 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || ||||||| |||| | ||| | | ||||||||| | ||||| ||| Sbjct 86920 AGAAGAACATTTGCAAGTAGAATATATCCAAATTATATAATAAAACAGTTAGGAATAAAA 86861 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| | || || || ||||| |||| ||||||||| |||||||||||||| ||| || Sbjct 86860 CATGTGAAGGGTATGATATTATATGGTCCTCCTGGTACTGGTAAAACATTAATAGCTAGA 86801 Query 164572 TGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | || | || || | | || ||| |||||| ||||||| |||||| ||| Sbjct 86800 CAAATAGGTAAAACATTAAATGCAAGAGAACCG--AAAATTATTAATGGACCTGAAATAT 86743 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || ||||||||||| | || |||| || || | || || ||| | ||||||||| Sbjct 86742 TAAATAAATATGTAGGGCAATCTGAAGAAAACATTCGTAATTTATTTAAAGAGGCTGAAT 86683 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAG 164749 || | || |||| || | | ||||||| ||||| | || |||||||||| Sbjct 86682 TGGAGTATAAACAAGCTGGAGAAAATTCATTATTACATATTATTATATTAGATGAGATAG 86623 Query 164750 ATGCTCTTT---GCAAAAAACGTGGTGAT-AATAT-----------TATTCATGATGCAG 164794 |||| ||| | ||| | || ||| | || | | | ||||| Sbjct 86622 ATGCAATTTGTCGACAAAGAGGTAGTGCTGCATCTAGTGGGTCAGGTGTAAATGATAGTA 86563 Query 164795 TGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTG 164854 | ||||| || || | || ||||||||||| ||| | |||||||||||| || | Sbjct 86562 TAGTTAACCAATTATTATCAAAAATAGATGGAGTAAATAGCTTAAATAATATACTACTAA 86503 Query 164855 TAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAG 164914 | |||||||| || || |||||||||||||| || |||||| |||| |||||||| | Sbjct 86502 TTGGTATGACAAATAGAATAGATTTAATTGATGAAGCATTATTAAGACCAGGTCGATTTG 86443 Query 164915 AATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTC 164974 |||| | || |||||| |||||| | |||||||| | ||||||| ||||| ||| Sbjct 86442 AATTACATATTGAAATATCATTACCAAATAAAGAAGGTAGAATTCAAATATTAAATATTC 86383 Query 164975 ATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAG 165034 || | || |||| | | ||| |||| | ||||| || || | || ||| Sbjct 86382 ATACGAAAAATATGAGACAAAATAATAAATTAAATAAAGATGTTAATATAGAAGAATTAG 86323 Query 165035 CTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 | | ||||| ||| | | ||||| ||| | || |||||||||||| Sbjct 86322 CAGAAAAAACTCCAAACTTTTCAGGTGCAGAAATTGAAGGATTAGTAAGA 86273 >seq11 Length=775211 Score = 197 bits (218), Expect = 2e-45 Identities = 430/629 (68%), Gaps = 21/629 (3%) Strand=Plus/Plus Query 6798 TGATCGAGTTAATTGTTCTTTTATAGCTTTTAT-ATGATCTAAATAAATATGAGCATCTC 6856 || || | |||| || ||||| |||||| | ||||| ||||| |||||||| || Sbjct 160396 TGTTCTATTTAACTGAATTTTTA-AGCTTTCAACATGATTATTATAAACATGAGCATTTC 160454 Query 6857 CTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTA 6916 | | ||| ||||||||| |||||| | || | |||| || || | |||||| | Sbjct 160455 CCAATACATGTATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAA 160514 Query 6917 ATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGAT 6976 ||| | ||| ||||| | |||||| || ||||| | || | ||| |||| ||||| Sbjct 160515 ATATAGAATAGGAAGCAATATTAAATGGAACACCAAGCCCTAAATCACAAGATCGTTGAT 160574 Query 6977 AACATTG-ACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGA 7035 | ||| ||| ||||| | || | | ||||||||||||| || | |||||| ||| Sbjct 160575 A-CATAATACATGATAATTTTCCATCAAAAACATAAAATTGACATAAAATATGACAAGGA 160633 Query 7036 GGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCA 7095 ||||| | | ||||| ||| | |||||| ||| || | ||| || ||| || Sbjct 160634 GGTAATGCCATTTTATCTAAATCTTTTACATTCCATGCACACAAAATAATTCGCCTA-CA 160692 Query 7096 T-TTGGATTTGTTTTTAATTTTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCTT 7153 | ||||| | |||||||||| || ||||| ||| ||| ||||| | ||| | | ||| Sbjct 160693 TGTTGGA-TCGTTTTTAATTAAATTGATAATATTTTTTAACTGATCAACACCTTTATCTT 160751 Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213 ||||| || ||| || | |||| | ||| ||||| |||||||||||||| ||||||| Sbjct 160752 TATAATCAGCATGCATATCTGTATATTCAGCACCAAAGTGTCTCCATTGAAATCCATAAA 160811 Query 7214 TAGGACCTAAATCACCTTCTTCACGATG--ATTAAATCCTAATCGATTTAAATTAGATTT 7271 | || |||| |||| |||| | ||| || | ||||| | || |||| | | Sbjct 160812 TTGGGCCTAGATCATTAACTTCTCTATGAAATAATTTCCTATT--ATCTAAAAACTCTCT 160869 Query 7272 TGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAA---ATTTAAAGAATTTGT 7328 || ||||| ||| ||||| || |||| ||||| | |||| |||| |||||| Sbjct 160870 TGTTCCATTAGCTTCCCATATTCTTACATTTTTTTCTAATAATGTATTT---CCATTTGT 160926 Query 7329 AGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGT 7388 ||| | | |||||||| | ||||| | || || | ||| | | ||||||| Sbjct 160927 TTCTCCCCTTATAAACCATAATAACTCTTCAATGATACCTCTTACAAATAATTTTTTTGT 160986 Query 7389 AGTGAATAAAGGGA---ATGTACTTAAAT 7414 || ||||| || | || |||||||| Sbjct 160987 TGTTAATAATGGAAAATATTCACTTAAAT 161015 >seq15 Length=364150 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| | ||| || ||||| || |||||| |||| || ||||||||||| | Sbjct 177757 TAAAGTAAAAGTACGATCTGTTAGAATACCCCAAATTGGAGATAAGTTTGCAAGTAGGCA 177698 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || || ||||| || ||||| | ||| | ||||||||||| ||||| || Sbjct 177697 TGGACAGAAAGGTACGATCGGTATAACCTATAGAATGGAAGATATGCCATTTACATCTGA 177638 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| | | || ||| ||||||| ||||||||||| ||||| ||| ||||| Sbjct 177637 TGGTACATTTCCTGATATTATTATGAACCCACATGCAGTTCCATCTCGTATGAC 177584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871508405600