Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9 143 2e-29 seq3 111 1e-19 >seq9 Length=1049758 Score = 143 bits (158), Expect = 2e-29 Identities = 183/249 (73%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || |||||||| | || || || || || || || ||||| | Sbjct 615352 TTTTTACGAAAATTTGCATACCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTT 615411 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGAT 94878 |||| | ||||||||| |||||||| | || |||| ||||||||| | || || Sbjct 615412 TTTGAATGTTATAATCAG--ATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAAT 615469 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 ||||||||| ||||| |||||||| |||||||| || | ||||| || || || | Sbjct 615470 TAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGGATTTTAGCTTTAACATTTTC 615529 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | || |||| | || || |||| ||||| ||||||||||| | |||||| ||||| Sbjct 615530 AATGGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAA 615589 Query 94999 GATCTGCAT 95007 ||| ||||| Sbjct 615590 GATTTGCAT 615598 Score = 129 bits (142), Expect = 5e-25 Identities = 182/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||| | |||| ||| ||| || || ||||| |||| || || ||||| |||||||| Sbjct 615575 TAAAGTTTTTACAAAGATTTGCATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGA 615634 Query 94816 TTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAA 94874 ||| ||||| | |||||| || | | || || || ||| || | |||||||| | | Sbjct 615635 TTCTTTTTGTATGTTATAGTCAGATAAT-GTTCTGCCATCTTCTAATTGTTTTCCAGCGA 615693 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 ||||||||||||| ||||| || || ||||||||||| || | ||||||||| || || Sbjct 615694 AGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTTGCTTTAACAT 615753 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 | | ||| || | | || || || | ||||| |||||||| || | ||||| | Sbjct 615754 TTTCAATAGTATCTGATGGTTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTA 615813 Query 94995 CAAAGATCTGCAT 95007 | || || ||||| Sbjct 615814 CGAAAATTTGCAT 615826 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| || || || || || || ||||| ||||| | ||||||||| Sbjct 615144 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAG-- 615201 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||||||| ||| |||| |||||||| |||| ||||||||||||||||| || | Sbjct 615202 ATAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTG 615261 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||||||||| || | |||||| || || || | | ||| || | | || | Sbjct 615262 GGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAA 615321 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||| |||||||| || | ||||| || || || ||||| Sbjct 615322 CATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 118 bits (130), Expect = 1e-21 Identities = 132/173 (76%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || |||||||| |||| || || || || || || ||||| | Sbjct 615808 TTTTTACGAAAATTTGCATACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTT 615867 Query 94821 TTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 |||| | ||||||||| | | || | || | || || | |||||||| |||| ||| Sbjct 615868 TTTGTATGTTATAATCAGATAATGTTCTTCCA-TCTTCTAATTGTTTTCCAGCAAAAATT 615926 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 |||||||||||||| ||||| ||||||||||| || | ||||||||| || || Sbjct 615927 AATCTTTGCTGATCAGGAGGGATACCTTCTTTATCTTGAATTTTTGCTTTAAC 615979 >seq3 Length=1741454 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || || || ||||| ||||| | |||||| || | ||| || ||| || Sbjct 1503663 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 1503722 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||||| | || ||||||||||| ||||| || ||||| |||||||| || | Sbjct 1503723 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1503782 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 |||||||| || || | | || |||| | || || |||| ||||| |||||| Sbjct 1503783 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1503842 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||||| |||||||| ||||| Sbjct 1503843 CCGGTTAATGTTTTTACAAAGATTTGCAT 1503871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290830159760