Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 244 1e-59 >seq2 Length=1775135 Score = 244 bits (270), Expect = 1e-59 Identities = 626/944 (66%), Gaps = 31/944 (3%) Strand=Plus/Plus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| | ||| |||||| | | | ||||||| ||||| |||| Sbjct 183153 ATATTTTCTTAAAAATCAGTGTTTAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 183209 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || |||||||||||| |||||| ||||| || ||||| || ||||||| || Sbjct 183210 ACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTGTAAA 183269 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| || ||||||||||| || | || | ||| |||||| | Sbjct 183270 GATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAA 183329 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | |||||||| ||| || |||||||| || |||||| |||| | | ||||||| Sbjct 183330 CATTCTAATAATCGATCAGCAACAAATTCGATGTATTGAGACATAAGTCTTGAATTCATT 183389 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || || || | ||| | || || | ||| ||| |||||| || ||||| Sbjct 183390 CCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCT 183449 Query 21416 ACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAA-------- 21467 || |||||| | | | | | || | || | | ||| | ||| Sbjct 183450 TTAACTATATTCTGAA--CAACCTCTTCTGG-----TA-ATTTATTTTCTAACAAGCTAT 183501 Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 | || ||||| |||||| || || |||||||||||||| |||||||||||| || Sbjct 183502 AAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAA 183561 Query 21528 ATGTTAAACCGGGCA-TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CC 21585 ||||||||||| | | || || | |||||| ||||||||||||| | |||| ||| || Sbjct 183562 ATGTTAAACCGTGTAATTTATTTTG-CTTTTTAAACCAAAATATTG-CACAAAAGCTTCC 183619 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 ||| || || || || || ||| || || | || |||| | | ||| | Sbjct 183620 ACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAA---AGAATT 183676 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATC 21705 | |||| ||||||||| |||||||| ||| || | ||| || || | || Sbjct 183677 TGTATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTC 183736 Query 21706 AATAGCTTTTAAAAGATG-AtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764 |||||| | || | || | | | | ||| |||| | || Sbjct 183737 AATAGCATGAAATAAATTTAACCTCTCCTTCT-CATCCTTAATATAATTATCAATTAATA 183795 Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824 |||||| ||||||| ||||||||||| | ||||| ||||| ||||| | | | Sbjct 183796 AACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAG 183855 Query 21825 CCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 | || ||| ||||| ||||| |||||| ||||| ||||||||||| Sbjct 183856 CTTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCAT 183915 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 |||| || ||||||||||| || | || ||||||||||| | ||| || | |||||| Sbjct 183916 CACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATT 183975 Query 21945 TTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004 ||| | ||| ||||| |||||||||||| |||||||| |||||||| || Sbjct 183976 TTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTT 184035 Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 ||| |||||||| | | |||| | ||| |||||| || ||| Sbjct 184036 CAGCTTTTTTATAAAAATTCCATACTTCAGGATATATAATAGGA 184079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900361181840