Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 383 2e-101 seq2 168 8e-37 >seq9 Length=1049758 Score = 383 bits (424), Expect = 2e-101 Identities = 973/1463 (67%), Gaps = 39/1463 (3%) Strand=Plus/Plus Query 62370 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62429 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | |||||| Sbjct 572702 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 572761 Query 62430 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62489 || || ||||||||||| | | | | |||||| | || | | || ||||| | | Sbjct 572762 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTT 572821 Query 62490 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 62546 |||| ||||||| |||| | ||| | |||| Sbjct 572822 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 572881 Query 62547 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 62603 | || || || || || | || | ||| ||||| || |||||||| || ||| | Sbjct 572882 AATATTCCTTTGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCATTTACTTGT-- 572938 Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 62662 |||| ||| | | ||||| ||| | ||||| || || || || || ||||| ||| Sbjct 572939 GCTAACTCAACAGACATTTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCT-ATT 572997 Query 62663 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || |||| ||||| ||| | || ||||||| |||| || ||||| | || ||| Sbjct 572998 TAATTCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 573055 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 |||||||| || || || || ||||| |||||||| ||||| || |||| |||||| | Sbjct 573056 AATCCTTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTA 573115 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 || || |||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 573116 ATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 573175 Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAAGGCA 62894 || | | ||| ||||| |||| | |||| | |||| | || ||| Sbjct 573176 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCA 573235 Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 | || || ||||||||||| ||||| |||| || | ||||| | || ||| Sbjct 573236 ATTGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCACAA 573295 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || | ||||||||| || || ||||||||||||| ||||||| || || || ||| Sbjct 573296 CATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCA 573355 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074 || ||||| | || |||| |||||||||||| ||| || || || || ||| Sbjct 573356 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCAT 573415 Query 63075 ACGACTCGAGCCTTTATTATAGATTTGTATCTCC---TTTCTCTTTCGTATAGTGTATAC 63131 | || | || | | | ||| | || | ||||| ||||||| |||||| Sbjct 573416 AAATCTTGTGCAAGAACTGT---TTTTTTTCCCAAATTTTCTGCTTCGTATTTTGTATAT 573472 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCC-AATCCAGGACATTCATCCGGACACAT 63190 ||| ||| || || || |||||| ||| | || || || ||||||| || ||||| Sbjct 573473 AATTTTTCAAATTCTTCACCCCAAG-ATTCACTTAAACCTGGGCATTCATTAGGGCACAT 573531 Query 63191 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63250 || | ||| | | | ||||| |||| ||||||||| | |||||| | ||||| ||| Sbjct 573532 TAAAGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGC 573591 Query 63251 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310 ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | || Sbjct 573592 ATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAA 573651 Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370 | | |||||| || ||||| ||||| | |||| || | | || | ||| Sbjct 573652 TTCAAAAATATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTTCC 573711 Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 || || ||||||| ||||| || || | |||| ||||||| |||||||||| | ||| Sbjct 573712 GCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACC 573771 Query 63431 GTTTGATATACCATTGGTACCGGAGATAT---AGCTTCCACTGGCACGAATATTACTAAT 63487 |||||||||||||| || || |||| | || || | | ||||| | Sbjct 573772 ATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGAC---CTCTAATATCTTGTAC 573828 Query 63488 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63547 | | |||||| || ||||| ||||| |||||||| ||| | ||||| || ||| | Sbjct 573829 AGCAACACCTATACCTCCTGCTGTTTTACTAATTAATGCACATTGCTTTAATGTTTCAAA 573888 Query 63548 GATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63606 ||||| ||||| |||| |||| | ||| || ||| || |||||||||| | | Sbjct 573889 TATACCTTCTATCGAATCAGATTTCATCGATAA-TAAAAAGCATGAAGACATTTGGGGCC 573947 Query 63607 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 63666 ||||||| ||||||||| || |||| ||| || ||||| |||||| ||| | || Sbjct 573948 TTGGTGTTCCCGAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGACATTA 574007 Query 63667 GATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGC 63725 || || || || | ||| || | ||| || | ||| ||||||| | || | | Sbjct 574008 AATGATAAGTTTCTAAAGCCTTTTCAAGATCATCAAT-ATGTATTCCTATAGATACTCTC 574066 Query 63726 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 63785 ||||| | || ||||| | ||||| || || || || || || ||||||||| | Sbjct 574067 ATTAATAAATGTTGAGGGCGTTCAATAATTTTATTATTAATACGTAATAAGTAGGATCTC 574126 Query 63786 TCCAAAGTTTTAAAACCAAAATA 63808 || || |||||||| |||||||| Sbjct 574127 TCTAATGTTTTAAATCCAAAATA 574149 >seq2 Length=1775135 Score = 168 bits (186), Expect = 8e-37 Identities = 333/488 (68%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 33380 GCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAG 33439 ||||||||| ||||||||| | | || |||| ||| || |||||||| || | Sbjct 183586 GCTTTTTAAACCAAAATATTGCACAAAAGCTTCCACTAAATAATATTCCTTCGACACATG 183645 Query 33440 CAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAAT 33499 || || | || ||| || || || | |||| |||||| || ||||| Sbjct 183646 CATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTTATCCATTTAGCTGCCCATA 183705 Query 33500 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCAT 33559 || || ||||||| || || |||| || |||| ||| | || | || | Sbjct 183706 ATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAACCTCTCCT 183765 Query 33560 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 33619 | ||| |||| |||| |||| || || | |||||| |||| || || || ||||||| Sbjct 183766 TCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAGTGTATATTTTCAA 183825 Query 33620 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33679 || || ||||| || || | |||| || | || ||||| ||| | ||||| Sbjct 183826 CAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTATTTGTACCTCTCTTAAAAAT- 183884 Query 33680 GTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33737 || | ||||||||||| |||||||| ||||| ||||||||||| || || ||||| Sbjct 183885 -TTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATG 183943 Query 33738 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATA 33796 ||||||||||| |||||| | | ||| ||| ||| || || || | ||| | |||| Sbjct 183944 TTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATA 184002 Query 33797 TATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGT 33856 ||||| |||||| | ||||||||||| || || || |||||||| | ||||| | | Sbjct 184003 AATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACTT 184062 Query 33857 CATAATAT 33864 || |||| Sbjct 184063 CAGGATAT 184070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946686068560