Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11 188 2e-42 seq9 176 1e-38 >seq11 Length=775211 Score = 188 bits (208), Expect = 2e-42 Identities = 466/694 (67%), Gaps = 16/694 (2%) Strand=Plus/Minus Query 111192 GAATATCAATATCTTCAGTTGATTTCTAAAGTACTAGAACATGGTGAATATCGAAG-TGA 111250 |||||||||||| | | | || | | | || || ||||| |||| ||| ||| Sbjct 161124 GAATATCAATATTTAAATATTATATATGATATAATAATGCATGGA-AATAAACAAGATGA 161066 Query 111251 CAGAACGGGCACTGGTACCGTAAGTTTATTTGGAGAAACAATGCGTTTTAATCT--GTCA 111308 ||||| || |||| ||||| ||||||| | | ||| |||||| | || | Sbjct 161065 TAGAACAGGTGTTGGTGTATTAAGTAAATTTGGATATATGATGAAATTTAATTTAAGTGA 161006 Query 111309 ACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACT 111367 | |||||||| | | |||||||| | || ||| ||| || || | ||||| | Sbjct 161005 AT--ATTTTCCATTATTAACAACAAAAAAATTAT-TTGTAAGAGGTATCATTGAAGAGTT 160949 Query 111368 TCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAAT 111427 | |||||||| | ||| ||||||| |||| | | || ||||||||||| ||| Sbjct 160948 ATTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTAGAAAAAAATGTAAGAAT 160889 Query 111428 TTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGG---TCTTGTCGACAACGA 111484 ||||| | |||||| || | || ||| ||||| | | || | | || | | || Sbjct 160888 ATGGGAAGCTAATGGAACAAGAGAGTTTTTAGAT--AATAGGAAATTATTTC-ATAGAGA 160832 Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 || |||||| || ||| |||| |||||||||||| | ||||||||||| || || | Sbjct 160831 AGTTAATGATCTAGGCCCAATTTATGGATTTCAATGGAGACACTTTGGTGCTGAATATAC 160772 Query 111545 AACCATGCACGACTCAT-ATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 | ||||| | || || || | | || |||||| ||| | ||| | || || Sbjct 160771 AGATATGCATG-CTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATCAATT 160713 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 |||||| ||| | ||||| | | | || |||||| || |||||||||| ||| | | Sbjct 160712 TAATTAAAAACGATCCAACATGTAGGCGAATTATTTTGTGTGCATGGAATGTAAAAGATT 160653 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | || ||||||||| | || || |||||| || | || || |||||||| || || | Sbjct 160652 TAGATAAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 160593 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 | ||||| |||||||| |||||| |||| | || ||||||||||| ||||||| Sbjct 160592 AATTATCATGTATTATGTATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCATTTAATA 160533 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 |||| || | || |||| | | || || || | ||| | |||| | || Sbjct 160532 TTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTG 160473 Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTA 111877 |||| || || || | ||| |||| |||||||| Sbjct 160472 AATTTATACATGTATTGGGAAATGCTCATGTTTA 160439 >seq9 Length=1049758 Score = 176 bits (194), Expect = 1e-38 Identities = 603/934 (65%), Gaps = 22/934 (2%) Strand=Plus/Minus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| ||| || | |||| ||||||| ||| ||||| ||| | | Sbjct 574155 TATGATTATTTTGGATTTAAAACATTAGAGAGATCCTACTTATTACGTATTAATAATAAA 574096 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| |||||||||| || ||| | |||||| | || |||| || || ||| ||| Sbjct 574095 ATTATTGAACGCCCTCAACATTTATTAATGAGAGTATCTATAGGAATACATATTGATGAT 574036 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCC 363558 |||| || | ||||| ||| | | ||| ||| || | || || || Sbjct 574035 CTTGAAAAGGCTTTAGAAACTTATCA---TTTAATGTCTCAAAAATATTTTACTCATGCT 573979 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || |||||| | | ||| | ||||| | | || || |||||||| |||||| | || Sbjct 573978 ACTCCAACATTATTTAATTCGGGAACACCAAGGCCCCAAATGTCTTCATGCTTTTTATTA 573919 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 ||||| ||||| || || ||||| ||||| ||| | ||| | ||||| | ||| Sbjct 573918 TCGATGAAATCTGATTCGATAGAAGGTATATTTGAAACATTAAAGCAATGTGCATTAATT 573859 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || | ||||| || || ||||| | | || || || | | || || ||| Sbjct 573858 AGTAAAACAGCAGGAGGTATAGGTGTTGCTGTACAAGATATTAGAGGTCAAAATTCTTAT 573799 Query 363739 ATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| | || || | || ||| || ||||| | ||||| ||| | | || ||| | | Sbjct 573798 ATTAGAGGAACTAATGGTATA-TCAAATGGTTTAGTTCCAATGTTAAGAGTTTTTAATGA 573740 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 ||| || || || || || || ||||| ||||| | || || | |||||| | ||| | Sbjct 573739 TACAGCAAGATATGTAGATCAAGGTGGCGGAAAAAGAAAGGGTTCTTTTGCTGTATATAT 573680 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAG 363916 || || || | ||||||||||| ||| | || | | ||||| ||| || |||| Sbjct 573679 TGAACCATGGCACTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCAC-GGTAAAG 573621 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 | |||||| | || |||||| | || ||||| ||||||| |||| |||||||| Sbjct 573620 AAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAA 573561 Query 363977 GCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCG 364036 | || ||| | ||| || ||| | | | ||||| | ||||| |||||| | | Sbjct 573560 GAGTAAAGGAAAATAAAAACTGGACTTTAATGTGCCCTAATGAATGCCCAGGTTTAAGTG 573501 Query 364037 ATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA------GGGAA 364090 | |||||||| || | || |||| ||| || ||| | || ||||| Sbjct 573500 AATCTTGGGGTGAAGAATTTGAAAAATTATATACAAAATACGAAGCAGAAAATTTGGGAA 573441 Query 364091 AGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150 | || ||| ||| ||||| | |||||||||| || | | || |||| Sbjct 573440 A------AAAAACAGTTCTTGCACAAGATTTATGGTTTGCTATATTACAAAGTCAAATTG 573387 Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGC 364210 | || || ||| |||||||| || |||||| | ||||| || || || || | Sbjct 573386 AAACTGGTGTACCATATATGTTATATAAAGATGCATGCAATTCTAAATCTAATCAAAAAA 573327 Query 364211 ACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCG 364270 | | || |||||| | || || ||||| || ||| ||||||| || | || | Sbjct 573326 ATTTAGGAACAATTAAATGTAGTAATTTATGTTGTGAAATTGTTGAATATACATCACCTG 573267 Query 364271 ACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 | || || || ||||| || || || || || Sbjct 573266 ATGAAGTAGCTGTTTGTAATCTAGCTTCAATTGC 573233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352497851612