Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9 138 1e-27 seq3 120 3e-22 >seq9 Length=1049758 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| |||||||||||| | || || | || || || ||| | Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAA-CCATC 615540 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || ||| || || || |||||||| || ||||| ||||| Sbjct 615539 TGATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCA 615480 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | |||| || ||| || ||| | ||||| | | ||| | |||||||| Sbjct 615479 ACAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATAA 615420 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||||||| || | |||||||| |||||| | |||||||| Sbjct 615419 CATTCAAAAAGAATCGACCTTACATTTAGTTTTAAGACTAAGAGGAGG 615372 Score = 132 bits (146), Expect = 4e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||||||||| |||||| | || || |||| || || ||| | Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAA-CCATC 615768 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| ||| ||| || |||||||| || || || ||||| Sbjct 615767 AGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 615708 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| ||| | || | || || || ||| | ||||||| ||||| | | | | || |||| Sbjct 615707 ACAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAA-CATTATCTGACTATA 615649 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| |||||||||||||| | || ||||| |||||||| ||||| || Sbjct 615648 ACATACAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGAGGTGG 615600 Score = 131 bits (144), Expect = 1e-25 Identities = 175/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||||||||| |||||| | || || |||| || ||| ||| | Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAG-CCATC 615312 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| || ||| || |||||||| || || || ||||| Sbjct 615311 AGATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 615252 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || ||| | |||| | || || ||| | ||||||| |||| | |||||||| Sbjct 615251 GCAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAA 615192 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGATT 24229 ||| ||||||||||| || | |||||||| |||||||| |||||||| |||| ||| Sbjct 615191 CATACAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGAGGAGGTTGCTAATCATT 615132 Query 24230 C 24230 | Sbjct 615131 C 615131 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAG 24077 |||||| | || ||| | || || ||| | ||| ||||| || | || ||| ||| Sbjct 616027 GGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCAAAA 615968 Query 24078 ATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAA 24137 ||| || |||||||| || ||||| ||||| || ||| | |||| | || || ||| Sbjct 615967 ATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCTGGAAAACAA 615908 Query 24138 CTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 | ||||||| |||| | | | | ||||||||||| ||||||||||| || | ||||| Sbjct 615907 TTAGAAGATGGAAGAA-CATTATCTGATTATAACATACAAAAAGAATCAACCTTACATTT 615849 Query 24197 AGTGTTAAGATTGAGAGGAGG 24217 ||| |||||||| |||||||| Sbjct 615848 AGTTTTAAGATTAAGAGGAGG 615828 Score = 104 bits (114), Expect = 2e-17 Identities = 181/263 (69%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 133013 TATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACAC 133072 |||||| ||||||||||| || | | || | ||||| || || || | ||| ||| Sbjct 573470 TATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAAACCTGGGCATTCATTAGGGCAC 573529 Query 133073 ATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATG 133132 || || | ||| |||| | | | || |||||||| || || |||| ||| || Sbjct 573530 ATTAAAGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATA 573589 Query 133133 GCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaaa 133192 ||| |||||||||| ||||| ||| ||||| || |||| | | || || ||| Sbjct 573590 GCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAA 573649 Query 133193 aaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCCTTTT- 133251 || |||||| |||| ||||| || || |||||||| || |||| || || ||||| Sbjct 573650 AATTCAAAAATATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTTTTT 573709 Query 133252 --ACCTCCCTGATCCACATGTCT 133272 || || ||||| |||| ||| Sbjct 573710 CCGCCACCTTGATCTACATATCT 573732 >seq3 Length=1741454 Score = 120 bits (132), Expect = 3e-22 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||||||||||||||| |||||| | || || | || || || || Sbjct 1503874 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA-CC 1503816 Query 24048 AAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | | || || || || | || ||| ||| || || |||||||| || || || || Sbjct 1503815 ATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGA 1503756 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 |||||| ||| | |||| || || || ||| | ||||||| ||||| | | | | || | Sbjct 1503755 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAA-CTTTATCTGACT 1503697 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||||||||||| || | ||||| || Sbjct 1503696 ATAACATTCAAAAAGAATCAACCTTACATTTGGT 1503663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935654170230