Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq9 138 1e-27 seq3 120 3e-22 >seq9 Length=1049758 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| | || |||||||| || || |||| ||| ||| | Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAG-CCATC 615312 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| | | || ||| |||||| ||||||||||| |||| |||||| Sbjct 615311 AGATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 615252 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | |||| ||| || |||||||| ||||||| | ||| | | |||||||| Sbjct 615251 GCAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAA 615192 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| |||||||| || || ||||| | || || ||||| ||||||| Sbjct 615191 CATACAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGAGGAGG 615144 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| | || |||||||| || || |||| || ||| | Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAA-CCATC 615768 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| | | || ||| ||||||| ||||||||||| |||| |||||| Sbjct 615767 AGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 615708 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | || | || || |||||||||||||||| || ||| | | || ||||| Sbjct 615707 ACAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAA 615648 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| |||||||| |||||| |||| | || || ||||| |||| || Sbjct 615647 CATACAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGAGGTGG 615600 Score = 122 bits (134), Expect = 7e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 115313 GGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAA 115372 |||||||| || ||| | || ||| | ||| || ||| | | || ||| |||| Sbjct 616027 GGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCAAAA 615968 Query 115373 ATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAA 115432 ||| ||||||||||| |||| ||||||||||||| | |||| ||| || |||||| Sbjct 615967 ATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCTGGAAAACAA 615908 Query 115433 TTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATG 115492 |||||||||| | ||| | | ||||||||||| |||||||| || || ||||| | Sbjct 615907 TTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACCTTACATTTA 615848 Query 115493 GTGTTGAGATTGCGAGGAGG 115512 || || ||||| ||||||| Sbjct 615847 GTTTTAAGATTAAGAGGAGG 615828 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | || |||||||| || || | || || ||| | Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAA-CCATC 615540 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | | || ||| ||||| ||||||||||| | || |||||| Sbjct 615539 TGATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCA 615480 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| || || |||||||| ||||| | | ||| | | |||||||| Sbjct 615479 ACAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTATAA 615420 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||| || || ||||| | || || ||| | ||||||| Sbjct 615419 CATTCAAAAAGAATCGACCTTACATTTAGTTTTAAGACTAAGAGGAGG 615372 >seq3 Length=1741454 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| ||||| ||||| | || |||||||| || || | || || || Sbjct 1503874 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA-CC 1503816 Query 115343 AGC-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | | || || ||| | | || ||| |||||| ||||||||||| | ||| ||| Sbjct 1503815 ATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGA 1503756 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| |||||| | |||| || || |||||||||||||||| || ||| | | || || Sbjct 1503755 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTA 1503696 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||||||||| || || ||||| |||| Sbjct 1503695 TAACATTCAAAAAGAATCAACCTTACATTTGGT 1503663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343657863920