Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 1e-13 >seq9 Length=1049758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 ||||| |||| || || || ||||| ||||| || || | | ||| | || | || || Sbjct 615618 ACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCA-TCTTC 615676 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || ||| ||||||| | || || || || ||||| |||||||| || | Sbjct 615677 TAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCT-T 615735 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| ||||| | | | || | |||||| | | || | |||| || | |||| Sbjct 615736 GAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAACATCGAGAGTGATTGTTT 615795 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||||| |||||||||||||| ||||| Sbjct 615796 TTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 |||||||||| ||| || || ||||| ||||| ||||| | | || | | | || || Sbjct 615162 ACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCA-TCTTC 615220 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 | || || || || | ||||| | ||||| || || ||||| |||||||| || | Sbjct 615221 CAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCT-T 615279 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| |||| | | | || | |||||| | | ||| | |||| || | |||| Sbjct 615280 GAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAACATCGAGAGTGATTGTTT 615339 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||||| |||||||||||||| ||||| Sbjct 615340 TTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 |||||||||| |||||| || ||||||||||| ||||| | || || ||| || Sbjct 615390 ACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGATAGTGTTCGGCCGTCTTCC 615449 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | || || || ||| | ||||| | || || || ||||| ||||||||||| || | Sbjct 615450 AATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGG 615509 Query 131146 ATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 ||||| |||| | | | || | ||||| | | || | || | || | ||||| Sbjct 615510 ATTTT-AGCTTTAACATTTTCAATGGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 615568 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || |||| ||||||||| || || ||||| Sbjct 615569 TCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012410589440