Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq20 127 1e-24 seq19 127 1e-24 seq11 127 1e-24 seq9 102 5e-17 seq3 89.7 3e-13 >seq20 Length=66119 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 1199 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 1140 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1139 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1105 >seq19 Length=70355 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 59032 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 59091 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 59092 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 59126 >seq11 Length=775211 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 772316 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 772375 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 772376 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 772410 >seq9 Length=1049758 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| || | || || || || | ||| || ||||| || || || |||| Sbjct 615598 TACCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAG 615657 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | | || |||||||||||||| || || |||| | ||||||||| | | Sbjct 615658 ATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTG 615717 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || ||||||| || ||||| | | ||||||| ||||| Sbjct 615718 GGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAA 615777 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 615778 CATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||| ||||| || | || || ||||| ||| || | || ||||| || || ||||||| Sbjct 615143 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGAT-TCTTTTTGTATGTTATAATCAG 615201 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | || || ||||||||||| ||||| |||| | ||| ||||| | | Sbjct 615202 ATAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTG 615261 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || |||||| || ||||| | | ||||||| |||| Sbjct 615262 GGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAA 615321 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 615322 CATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 >seq3 Length=1741454 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38109 ACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||||| ||| || | || |||||||| || || ||||| ||| | | || || Sbjct 1503663 ACCAAATGTAAGGTTGAT-TCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTC 1503721 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 |||||||||||| || || |||| | ||||||||| | ||| | |||||||| || Sbjct 1503722 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1503781 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 |||||| || ||||| | | ||||| |||||| || | || || ||||| Sbjct 1503782 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1503841 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || ||||| || || || ||||| || Sbjct 1503842 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1503874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946930576846