Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9 136 3e-27 seq3 120 3e-22 >seq9 Length=1049758 Score = 136 bits (150), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| ||||| || || ||| | ||||| | || || || | ||| Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| || || |||||||| ||||| ||||| Sbjct 615538 GATACCATTGAA--AATGTTAAAGCTAAAATCCAA-GATAAAGAAGGAATTCCTCCTGAT 615482 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | ||||| ||||| |||||||| ||||| | || || | ||||| Sbjct 615481 CAACAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTATCTGATTAT 615422 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || |||||||||| |||| ||||||||||| Sbjct 615421 AACATTCAAAAAGAATCGACCTTACATTTAGTTTTAAGACTAAGAGGAGG 615372 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || || ||||| ||| | ||||| |||| || ||| | || Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA 615311 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| || |||||||| || |||||||| Sbjct 615310 GATACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGTATCCCACCTGAT 615254 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | |||||||| || |||||||| ||||||| | || | ||||| Sbjct 615253 CAGCAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTAT 615194 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || |||||||||| |||| |||||||||| Sbjct 615193 AACATACAAAAAGAATCAACCTTACATTTAGTTTTAAGATTAAGAGGAGG 615144 Score = 118 bits (130), Expect = 9e-22 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || || ||||| ||| | ||||| |||| || || | || Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAACCATCA 615767 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || ||||||||| ||| || |||||||| || |||||||| Sbjct 615766 GATACTATTGAA--AATGTTAAAGCAAAAATTCAA-GATAAAGAAGGTATCCCACCTGAT 615710 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || || || || |||||||||||||||| | || | || || Sbjct 615709 CAACAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTAT 615650 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || |||| ||||| |||| ||||||| || Sbjct 615649 AACATACAAAAAGAATCTACTTTACACTTAGTTTTAAGATTAAGAGGTGG 615600 Score = 104 bits (114), Expect = 2e-17 Identities = 113/149 (76%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 ||||||||| ||| || |||||||| || || ||||| || || | | |||||||| Sbjct 615975 AAGCAAAAATTCAA-GATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTTGCT 615917 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || |||||||||||||||| | || | ||||| || || ||||||||||| || Sbjct 615916 GGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCAACC 615857 Query 25197 CTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| |||| |||||||||| Sbjct 615856 TTACATTTAGTTTTAAGATTAAGAGGAGG 615828 >seq3 Length=1741454 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || || ||||| ||| | ||||| | || || || | || Sbjct 1503872 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1503813 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || || | || ||||||||| || || |||||||| ||||| ||||| Sbjct 1503812 TGATACAATTGAA--AATGTTAAAGCAAAAATCCAA-GATAAAGAAGGAATTCCCCCTGA 1503756 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | ||||| || || |||||||||||||||| | ||| | || || Sbjct 1503755 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTA 1503696 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || |||||||||||||| || ||||||| || Sbjct 1503695 TAACATTCAAAAAGAATCAACCTTACATTTGGT 1503663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327651441790