Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-47 >seq2 Length=1775135 Score = 205 bits (226), Expect = 1e-47 Identities = 590/889 (66%), Gaps = 29/889 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| ||||||| || || ||||| | |||||||||||||| || ||||||| Sbjct 183206 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTG 183265 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||||| | | || | | | | |||||| || | | || ||||| | | | Sbjct 183266 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTGGAACAAC 183324 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC-AA 92965 | | | | | ||||||| |||||| |||||||| ||||| |||||||| || || || Sbjct 183325 CTAAACATTCTAATAATCGATCAGCAACAAATTCGATGTATTGAGACAT-AAGTCTTGAA 183383 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAA 93023 |||||||| | | | ||||| || || | || |||||||| | | ||| Sbjct 183384 TTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCT--ACTTCAA 183441 Query 93024 CGGCTTCTTTCAAGAT-TTCT-ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT 93081 | |||||||| | || |||| | | || || | |||| ||| | | | | | | Sbjct 183442 CTGCTTCTTTAACTATATTCTGAACAACCT-CT-TCTGGTAATTTATTTTCTAACAAGCT 183499 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 || ||||| || ||| || || ||||| ||||| || | || || ||||| || Sbjct 183500 ATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACT 183559 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||||||||||| |||| | | || || | ||||||||||| | ||| || || Sbjct 183560 AAATGTTAAACCGTGTAATTTATTTTGCTTTTTAAACCAAAATATTGCACAAAAGCTTCC 183619 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAA---AATTTGC 93258 | ||| ||||| ||||| || |||| || ||||| | ||| |||| |||||| Sbjct 183620 ACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTG- 183678 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || | |||||||| ||||| ||||| || || || |||| | Sbjct 183679 -----TATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATT 183733 Query 93319 TTCGATAGCGTTAAAT--AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 ||| ||||| | |||| | ||| || ||| | | ||| || || |||| ||| Sbjct 183734 TTCAATAGCATGAAATAAATTTAACCT--CTCCTTCTCATCCTTAATATAATTATCAATT 183791 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 || | | ||| ||||||| || | ||| || | || ||||| || || || | Sbjct 183792 AATAAACTATATGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTT 183851 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTAT 93495 ||||||| | || || || ||| ||||| | ||| | | |||||| ||||| Sbjct 183852 TTAGCTTCAATTATTTGTACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTAT 183910 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 ||||| ||||||||||| || || | ||| |||||||||||||| |||| | || Sbjct 183911 TCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATT 183970 Query 93556 AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 | || || | || | ||| |||| | ||| | |||||| |||||||||| || Sbjct 183971 TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGA 184030 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 ||||| |||||||| || | || ||||| || ||||| ||| ||| Sbjct 184031 GGCTTCAGCTTTTTTATAAAAATTCCATACTTCAGGATATATAATAGGA 184079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860340589840