Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq9 104 2e-17 seq3 104 2e-17 >seq9 Length=1049758 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| | ||||| ||||| || || | || || || Sbjct 615370 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAGCCATCA 615311 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| |||||| || |||||||| | || ||||| Sbjct 615310 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 615251 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | |||| ||| || ||||||||||||||| | ||| | | |||||||| Sbjct 615250 CAAAGATTAATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACACTATCTGATTATAAC 615191 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 |||||||||||||| || |||||||||| || Sbjct 615190 ATACAAAAAGAATCAACCTTACATTTAGTTTT 615159 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| | ||||| ||||| || || | || ||||| Sbjct 615826 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATCACTCTCGATGTTGAACCATCA 615767 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| ||||||| || |||||||| | || |||||| Sbjct 615766 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 615707 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | || | || || |||||||| |||||| | ||| | | || ||||| Sbjct 615706 CAAAGATTAATCTTCGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGACTATAAC 615647 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 ||||||||||||||||| |||| ||||| || Sbjct 615646 ATACAAAAAGAATCTACTTTACACTTAGTTTT 615615 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || || ||||| || || | || ||||| Sbjct 615598 ATGCAAATCTTTGTAAAAACTTTAACTGGAAAAACAATCACTCTTGATGTTGAACCATCT 615539 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| ||||| || |||||||| |||| |||||| Sbjct 615538 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAAGGAATTCCTCCTGATCAA 615479 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 111364 ||||| | |||| || || |||||||||||||| | || ||||| | ||||||| Sbjct 615478 CAAAGATTAATTTTCGCCGGAAAACAATTGGAAGACGGCCGAACACTAT--CTGATTATA 615421 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 | || ||||||||||| || |||||||||| || Sbjct 615420 ACATTCAAAAAGAATCGACCTTACATTTAGTTTT 615387 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 111262 GTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTAT 111321 || ||| ||||||| || |||||||| | || ||||| ||||| | |||| | Sbjct 615979 GTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCTCCTGATCAGCAAAGATTAATTTTT 615920 Query 111322 GCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCT 111381 || || |||||||| |||||| | ||| | | |||||||| |||||||||||||| Sbjct 615919 GCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAACATACAAAAAGAATCA 615860 Query 111382 ACACTACATTTAGTGTT 111398 || |||||||||| || Sbjct 615859 ACCTTACATTTAGTTTT 615843 >seq3 Length=1741454 Score = 104 bits (114), Expect = 2e-17 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 111179 GTTTA--AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAAC 111236 ||||| ||||||||||| ||||| ||||| | ||||| ||||| || || | || Sbjct 1503881 GTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGT 1503822 Query 111237 GGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCC 111296 ||||| ||| | ||| | || ||| |||||| || |||||||| |||| Sbjct 1503821 TGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCC 1503762 Query 111297 CGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGC 111356 | ||||||||||| | |||| || || |||||||| |||||| | |||| | | Sbjct 1503761 CCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGCAGAACTTTATC 1503702 Query 111357 CGATTATAATATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||| || ||||||||||| || ||||||| || Sbjct 1503701 TGACTATAACATTCAAAAAGAATCAACCTTACATTTGGT 1503663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423039659717200