Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9 149 1e-30 seq3 132 9e-26 >seq9 Length=1049758 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| || || |||||||| |||||||| || || | ||| || |||||| Sbjct 615615 AAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCT 615674 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || ||||| || | ||||||||| || ||||| || ||||| || ||| Sbjct 615675 TCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCT 615734 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| ||||| || || || || || |||| || ||| || || | ||||| ||| Sbjct 615735 TGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAACATCGAGAGTGATTGTT 615794 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || | || || ||||| || ||||| Sbjct 615795 TTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 131 bits (144), Expect = 3e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || |||| || || |||||||| ||||||||||| || ||||| || |||||| Sbjct 615159 AAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCATCT 615218 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 || || || || || || || || | |||||| || || ||||| || ||||| || ||| Sbjct 615219 TCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCT 615278 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| || || || || || || || |||| || || || || | ||||| ||| Sbjct 615279 TGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAACATCGAGAGTGATTGTT 615338 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || | || || ||||| || ||||| Sbjct 615339 TTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 131 bits (144), Expect = 3e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || |||| || || |||||||| ||||||||||| || ||||| | || ||| Sbjct 615387 AAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGATAGTGTTCGGCCGTCT 615446 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 || || || || |||||||| || | ||||||||| || || ||||| ||||| || ||| Sbjct 615447 TCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCT 615506 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || || || || || || || ||||| || | || ||| || || | ||||| ||| Sbjct 615507 TGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAACATCAAGAGTGATTGTT 615566 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || | || || || || || ||||| Sbjct 615567 TTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || |||| || || |||||||| ||||||||||| || | ||| || |||||| Sbjct 615843 AAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGATAATGTTCTTCCATCT 615902 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || || || | |||||| || || || || || ||||| || ||| Sbjct 615903 TCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAGGGATACCTTCTTTATCT 615962 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| ||||| || || || ||||| || | || || || || | ||| || ||| Sbjct 615963 TGAATTTTTGCTTTAACATTTTCAATGGTATCGGATGGCTCAACATCAAGGGTTATAGTT 616022 Query 68430 TTTCC 68434 ||||| Sbjct 616023 TTTCC 616027 >seq3 Length=1741454 Score = 132 bits (146), Expect = 9e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| |||| || || |||||||| |||||||| || || | || || |||||||| Sbjct 1503662 TACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTC 1503721 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||| || || || ||||| || | ||||||||| || || ||||| ||||| || ||||| Sbjct 1503722 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1503781 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || ||||| || || || || || || | || ||| || || | ||||| ||||| Sbjct 1503782 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1503841 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| || | || || || || || |||||| Sbjct 1503842 TCCGGTTAATGTTTTTACAAAGATTTGCATT 1503872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621639661520