Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9 122 7e-23 seq3 96.9 3e-15 >seq9 Length=1049758 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | |||||| ||||||||||||| || ||||||||||||||||| ||||| Sbjct 615369 ATACCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCA 615428 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| | |||||| || ||| | || | | ||||| || ||| Sbjct 615429 GATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGA 615488 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || || ||| | |||| | | ||||| ||| || | | ||| Sbjct 615489 GGAATTCCTTCTTTATCTTGGAT-TTTAGCTTTAACATTTTCAATGGTATCAGATGGTTC 615547 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | |||||||||||| || ||||| Sbjct 615548 AACATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 116 bits (128), Expect = 3e-21 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| || | || ||| |||||||| |||| |||||||||||||| ||||| || || Sbjct 615597 ATACCACCTCTTAATCTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCA 615656 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | | || || | |||||| | |||||| |||||| |||| | | ||||| || || Sbjct 615657 GATAAT-GTTCTGCCATCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGG 615715 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATT 114330 || || |||||||| || ||| ||||| |||| | | ||||| || || | | || Sbjct 615716 TGGGATACCTTCTTTATCTTGAAT-TTTTGCTTTAACATTTTCAATAGTATCTGATGGTT 615774 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | || | ||||| ||||| | |||||||| ||||| ||||| Sbjct 615775 CAACATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| || | || ||| ||||||||||||| || ||||||||||| ||||| ||||| Sbjct 615825 ATACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCA 615884 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | | || || | |||||| | |||||| ||||| | || | | || || || || Sbjct 615885 GATAAT-GTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGG 615943 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATT 114330 ||| || |||||||| || ||| ||||| |||| | | ||||| ||| |||| | | Sbjct 615944 AGGGATACCTTCTTTATCTTGAAT-TTTTGCTTTAACATTTTCAATGGTATCGGATGGCT 616002 Query 114331 CGACGTCCACGGTCACCGTTTTGCC 114355 | || || | ||| | ||||| || Sbjct 616003 CAACATCAAGGGTTATAGTTTTTCC 616027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || | || ||| ||||||||||||| || ||||||||||| ||||| ||||| Sbjct 615143 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGA 615202 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || | |||||| | |||||| ||||| | || | | || || || || || Sbjct 615203 TAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 615262 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGA 114333 || |||||||| || ||| ||| | |||| | | ||||| || || | | || | Sbjct 615263 GATACCTTCTTTATCTTGAAT-TTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAA 615321 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | ||||| ||||| | |||||||| ||||| ||||| Sbjct 615322 CATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 >seq3 Length=1741454 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||||| || ||||||||||||||||| || || | ||| | |||||| Sbjct 1503663 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 1503722 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | |||||| |||||| | || | | ||||| || || ||||| |||||||| || Sbjct 1503723 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1503782 Query 114294 ATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||||| |||| | | ||||| || || | | ||| || || | || | ||||| Sbjct 1503783 AT-TTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1503841 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| | ||||||||||| || ||||| Sbjct 1503842 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1503871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134062054392