Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9 134 3e-26 seq3 118 3e-21 >seq9 Length=1049758 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | | || | || ||||||||||||||||| ||||| Sbjct 615635 TTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCGAA 615694 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | | |||||| | |||||| ||||||||||| || ||||| ||||| || || Sbjct 615695 GATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATT 615754 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | ||| || ||||| ||||| || || ||||| | || || || Sbjct 615755 TTCAATAGTATCTGATGGTTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTAC 615814 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 615815 GAAAATTTGCAT 615826 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | || || || |||||||| ||||||||||| ||||| Sbjct 615407 TTCTTTTTGAATGTTATAATCAGATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAA 615466 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || |||||||||||||| |||||||| ||||| || || Sbjct 615467 AATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGGATTTTAGCTTTAACATT 615526 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||| || || || ||||| || || || || | ||| || || Sbjct 615527 TTCAATGGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTAC 615586 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 615587 AAAGATTTGCAT 615598 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | || || | ||| ||||| ||||||||||| || || Sbjct 615179 TTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCATCTTCCAATTGTTTTCCAGCAAA 615238 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| | |||||| ||||||||||| || ||||| ||||| || || Sbjct 615239 AATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTAACATT 615298 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | || || ||||| ||||| || || ||||| | || || || Sbjct 615299 TTCAATAGTATCTGATGGCTCAACATCGAGAGTGATTGTTTTTCCGGTTAATGTTTTTAC 615358 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 615359 GAAAATTTGCAT 615370 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | | || | ||| ||||||||||||||||| || || Sbjct 615863 TTCTTTTTGTATGTTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAA 615922 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| | ||||| ||||||||||| || ||||| ||||| || || Sbjct 615923 AATTAATCTTTGCTGATCAGGAGGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATT 615982 Query 288402 TTCTATAGAATCG 288414 ||| || | |||| Sbjct 615983 TTCAATGGTATCG 615995 >seq3 Length=1741454 Score = 118 bits (130), Expect = 3e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | | || | || ||||||||||||||||| ||||| Sbjct 1503680 TTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCAGCGAA 1503739 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || |||||||||||||| |||||||| ||||| || || Sbjct 1503740 AATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTAACATT 1503799 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||| || || || ||||| || || ||||| | || || || Sbjct 1503800 TTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTTTTTAC 1503859 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 1503860 AAAGATTTGCATT 1503872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653402454748