Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq3 98.7 1e-15 >seq9 Length=1049758 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | |||||||||||||||||||| ||||| | | || || ||||||| Sbjct 615390 ACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGATAGTGTTCGGCCGTCTTCC 615449 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || ||||| |||| | | || || || ||||||||||||||||| ||||| Sbjct 615450 AATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGG 615509 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | |||| ||||| ||| || | |||||| | || || || | ||| | || || Sbjct 615510 A-TTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 615568 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||||||||| || |||||||| Sbjct 615569 TCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || ||||||||||| ||||| ||||| | | || | Sbjct 615153 AATCTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGATAGTGTTCTT 615212 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | ||||| || || || || |||||| Sbjct 615213 CCATCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCT 615272 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | ||||| | || || || | ||| Sbjct 615273 TTATCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAACATCGAGAGT 615331 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| || |||||||||||||||||||| Sbjct 615332 GATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 >seq3 Length=1741454 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||||||||| || || | | || | | ||||| | || || || Sbjct 1503675 GTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 1503734 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | | || || || || |||||||||||||| ||||| | |||||||||| Sbjct 1503735 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGA-TTTTTGCTTT 1503793 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||||| | || || || | ||| | || || ||||| || || Sbjct 1503794 AACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 1503853 Query 64426 TTTTACGAAAATTTGCATTTT 64446 |||||| || ||||||||||| Sbjct 1503854 TTTTACAAAGATTTGCATTTT 1503874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644387793040