Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9 140 3e-28 seq3 122 8e-23 >seq9 Length=1049758 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | |||||||| ||||| || |||||||| | ||| | | Sbjct 615156 CTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCA 615215 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||||||||| || | || |||| |||||| || || || || ||||||||| Sbjct 615216 TCTTCCAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTA 615275 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | || || || | ||| || |||||||| | Sbjct 615276 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAACATCGAGAGTGATT 615335 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| |||||||| ||||||||||| Sbjct 615336 GTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 129 bits (142), Expect = 5e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || || || |||| ||| | || ||||| ||||| || |||||||| Sbjct 615369 ATACCTCCTCTTAGTCTTAAAACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCA 615428 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || || | || |||||||||||||| ||| | || |||| ||| || || | Sbjct 615429 --GATAGTGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAG 615486 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| |||||||||||||| ||||| ||| | ||| | ||| || || | | Sbjct 615487 GAGGAATTCCTTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTT 615546 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| | ||||| || |||| |||||||||||| |||||||| Sbjct 615547 CAACATCAAGAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || | || ||||| ||||| || ||||| || | ||| | | Sbjct 615612 CTTAAAACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCA 615671 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| ||| | || |||| ||| || || || || || ||||||||| Sbjct 615672 TCTTCTAATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTA 615731 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| ||| | ||| | || || || | || || |||||||| | Sbjct 615732 TCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAACATCGAGAGTGATT 615791 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| |||||||| ||||||||||| Sbjct 615792 GTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | |||||||| ||||| || |||||||| | ||| | | Sbjct 615840 CTTAAAACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGATAATGTTCTTCCA 615899 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || | || |||| |||||| || || || || ||||||||| Sbjct 615900 TCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAGGGATACCTTCTTTA 615959 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| ||| | ||| | ||| ||||| | ||| || || || || | Sbjct 615960 TCTTGAATTTTTGCTTTAACATTTTCAATGGTATCGGATGGCTCAACATCAAGGGTTATA 616019 Query 45306 GTTTTGCC 45313 ||||| || Sbjct 616020 GTTTTTCC 616027 >seq3 Length=1741454 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 |||||||| ||||| || ||||| || | ||| | ||| || ||||||||||| Sbjct 1503675 GTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 1503734 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | || |||| ||| || || || ||||| |||||||||||||| |||||| ||| Sbjct 1503735 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1503794 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | || || || | || || || ||||| | ||||| ||||||| ||| Sbjct 1503795 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1503854 Query 45324 TTTACAAAAATTTGCAT 45340 |||||||| |||||||| Sbjct 1503855 TTTACAAAGATTTGCAT 1503871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002827097360