Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 7e-16 >seq9 Length=1049758 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| || || |||||||||||| |||||||| | | | | |||| ||| Sbjct 615162 ACTAAATGTAAGGTTGATTCTTTTTGTATGTTATAATCAGATAGTGTTCTTCCATCTTCC 615221 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || |||||||||| | |||||||| | || | |||||||| || Sbjct 615222 AATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGA 615281 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| ||||| | | | || |||| || || || | ||| |||||||| Sbjct 615282 ATTTTAGCTTTAACATTTTCAATAGTATCTGATGGCTCAACATCGAGAGTGATTGTTTTT 615341 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||||||||| || ||||| Sbjct 615342 CCGGTTAATGTTTTTACGAAAATTTGCAT 615370 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| || || ||||||||| || |||||||| | | || | || ||| Sbjct 615390 ACTAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGATAGTGTTCGGCCGTCTTCC 615449 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| ||| | |||||||| | || ||||| | || | |||||||| || Sbjct 615450 AATTGTTTTCCGGCGAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGG 615509 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| ||||| | | | || || | ||| || || | ||| |||||||| Sbjct 615510 ATTTTAGCTTTAACATTTTCAATGGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 615569 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||||||||| ||||| ||||| Sbjct 615570 CCAGTTAAAGTTTTTACAAAGATTTGCAT 615598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || || || ||||| |||||||||||| ||||| || | || | |||| || Sbjct 615618 ACTAAGTGTAAAGTAGATTCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCT 615677 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || | || ||||| | || ||||| | || | |||||||| || Sbjct 615678 AATTGTTTTCCAGCGAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGA 615737 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 |||||| ||||| | | | || |||| ||| || || | ||| |||||||| Sbjct 615738 ATTTTTGCTTTAACATTTTCAATAGTATCTGATGGTTCAACATCGAGAGTGATTGTTTTT 615797 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||||||||| || ||||| Sbjct 615798 CCGGTTAATGTTTTTACGAAAATTTGCAT 615826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369320584578