Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9 178 2e-39 >seq9 Length=1049758 Score = 178 bits (196), Expect = 2e-39 Identities = 724/1129 (64%), Gaps = 14/1129 (1%) Strand=Plus/Minus Query 111870 CATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATT 111929 || ||| | |||| | || ||| ||||||||| || |||||| |||| ||||| | Sbjct 573825 CAAGATATTAGAGGTCAAAATTCTTATATTAGAGGAACTAATGGTATATCAAATGGTTTA 573766 Query 111930 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC-- 111987 |||||||| | | || ||||| | ||||| | |||||| | |||| ||| | Sbjct 573765 GTTCCAATGTTAAGAGTTTTTAATGATACAGCAAGATATGTAGATCAAGGTGGCGGAAAA 573706 Query 111988 -GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046 | ||||| ||| | || || ||| |||| ||||||||| | ||||| | || || | Sbjct 573705 AGAAAGGGTTCTTTTGCTGTATATATTGAACCATGGCACTCAGATATTTTTGAATTTTTA 573646 Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106 || || | || || ||| | || || | | || ||| | || | ||| | Sbjct 573645 GATTTAAGAAAAAATCACGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATT 573586 Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166 ||| | || ||| | || ||||| ||||| |||| | | || ||| || | | || Sbjct 573585 TGGGTACCTGATTTATTTATGAAAAGAGTAAAGGAAAATAAAAACTGGACTTTAATGTGC 573526 Query 112167 CCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACAC 112225 || | || || || ||| | || | |||||| || |||||| | || || Sbjct 573525 CCTAATGAATGC-CCAGGTTTAAGTGAATCTTGGGGTGAAGAATTTGAAAAATTATATAC 573467 Query 112226 AAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGC 112285 ||| ||||| | ||||| | || | || || | || ||| | ||| || Sbjct 573466 AAAATACGAAGCAGAAAATTTGGGAAAAAAAACAGTTCTTGCACAAGATTTATGGTTTGC 573407 Query 112286 TATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAA 112345 ||| | | ||||| || |||||| |||||||||| | || ||||| || || || Sbjct 573406 TATATTACAAAGTCAAATTGAAACTGGTGTACCATATATGTTATATAAAGATGCATGCAA 573347 Query 112346 CCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAAT 112405 || ||||||||| ||||| || || || || || | ||| ||||| Sbjct 573346 TTCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAATTTATGTTGTGAAAT 573287 Query 112406 CTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCC 112465 | |||| |||| ||||| ||||| ||||| || || ||||| || | Sbjct 573286 TGTTGAATATACATCACCTGATGAAGTAGCTGTTTGTAATCTAGCTTCAATTGCATTATG 573227 Query 112466 CAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAA 112525 || | ||| ||| ||| | ||| |||| ||| | ||||| | | || |||| || Sbjct 573226 TAAATTTGTTGATAGAGAAAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAA 573167 Query 112526 AACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGC 112585 || | | || | ||| || | | | ||||||| ||||||| |||||| || | || Sbjct 573166 AATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGC 573107 Query 112586 TCGTAA-ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG 112644 || || ||| |||| ||||| | || ||||| | || || ||||| | || ||| Sbjct 573106 -CGAAAGATCAAATAAAAGACATAGGCCTATTGGAATAGGAGTACAAGGATTAGCAGATA 573048 Query 112645 TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTA 112704 ||| || |||| | | ||| ||| || || ||||| || ||| | ||| | | Sbjct 573047 CATTTATGCTTTTAAGATATCCATATGAATCTGATGAAGCTAAAGAATTAAATAGAAGAA 572988 Query 112705 TATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATG 112764 |||||||||| |||||| | || ||| | || | | ||||| ||| | || ||| Sbjct 572987 TATTTGAGACTATGTATTATGCTGCTTTAGAAATGTCTGTTGAGTTAGCACAAGTAAATG 572928 Query 112765 GTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGT 112824 | ||||||||| | | | | ||| |||||| |||| | | ||||||||||||| Sbjct 572927 GACCATATGAATCATATCAAGGTAGTCCAGCAAGCAAAGGAATATTACAATTTGATATGT 572868 Query 112825 GGGAAGGTGAGACCA-AGCTTCACTA---CGACTGGGACGCTCTCAAGGAACGCATCAAG 112880 |||| | | | | | | | || || ||||| | | || || | ||| Sbjct 572867 -GGAATGCAAAAGTAGATAATAAATATTGGGATTGGGA-TTTATTAAAAAAAAAAATAAG 572810 Query 112881 GA-GAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 112939 | | | || | | || |||| | | ||||| ||||||||||| || || |||| Sbjct 572809 TATGCATGGATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACA 572750 Query 112940 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 ||| || || |||||||||| ||||||||| || || | ||||| ||| Sbjct 572749 AATTTTAGGAAATAATGAATCCTTTGAACCATATACAAGTAACATTTAT 572701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741887887520