Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq9 114 2e-20 >seq9 Length=1049758 Score = 114 bits (126), Expect = 2e-20 Identities = 457/714 (64%), Gaps = 9/714 (1%) Strand=Plus/Plus Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388 || ||||| | |||||| ||| || || || ||||| || || || || ||| Sbjct 573275 GTATATTCAACAATTTCACAACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGA 573334 Query 110389 TTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 || ||||| || ||||||||||| ||||| | ||| ||||| ||||||||| | || Sbjct 573335 TTAGATTTAGAATTGCATGCATCTTTATATAACATATATGGTACACCAGTTTCAATTTG- 573393 Query 110449 GACTTGAGAATG--GCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506 |||| ||| || ||||| ||| || | || ||| || | | | || Sbjct 573394 -ACTTTGTAATATAGCAAACCATAAATCTTGTGCAAGAACTGTTTTTTTTCCCAAATTTT 573452 Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566 | | ||||| || || || || | |||||||| | || | ||| | ||| | Sbjct 573453 CTGCTTCGTATTTTGTATATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAAACC-T 573511 Query 110567 TCGCCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 || || | || || | | | ||| ||| | |||| || || ||||| || Sbjct 573512 GGGCATTCATTAGGGCACATTAAAGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAAT 573571 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685 | ||||| | ||| || || | || | ||||| | ||||| | ||| || Sbjct 573572 AAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGA 573631 Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745 || | || || ||||| || | ||||| |||||||||||||| | ||| ||||| Sbjct 573632 TTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAGTGCCATGGTTCAATATATACAGCA 573691 Query 110746 ATGGATCCCTTAC---GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACC 110802 | || ||||| | | || | || | ||||| | |||||| |||| || || Sbjct 573692 AAAGAACCCTTTCTTTTTCCGCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACT 573751 Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTG 110862 || | ||| |||| | |||| ||| |||||| || || ||||| || || | Sbjct 573752 CTTAACATTGGAACTAAACCATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGA 573811 Query 110863 GCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC 110922 | | ||| || || | | | ||| ||||| || || ||||||||| |||||| Sbjct 573812 CCTCTAATATCTTGTACAGCAACACCTATACCTCCTGCTGTTTTACTAATTAATGCACAT 573871 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAA 110982 | | | ||| || | ||||| || |||||||| | || | | | || |||||| Sbjct 573872 TGCTTTAATGTTTCAAATATACCTTCTATCGAATCAGATTTCATCGATAATAAAAAGCAT 573931 Query 110983 GAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 |||||||| || || | || ||||||| ||| || | ||| || || |||||| Sbjct 573932 GAAGACATTTGGGGCCTTGGTGTTCCCGAATTAAATAATGTTGGAGTAGCATGA 573985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975514094800