Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq11 143 4e-29 seq15 116 5e-21 >seq11 Length=775211 Score = 143 bits (158), Expect = 4e-29 Identities = 428/651 (66%), Gaps = 16/651 (2%) Strand=Plus/Minus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGTT-TACGCC 104854 ||||| ||||||||||| ||| | ||||| | |||||||||||| || || || | Sbjct 161021 AATTTAATTTAAGTGAAT--ATTTT-CCATTATTAACAACAAAAAAATTATTTGTAAGAG 160965 Query 104855 AATATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAAT 104914 ||| || |||| ||||||||| | || | || ||||||| || ||| Sbjct 160964 G-TATCATTGAAGAGTTATTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 160906 Query 104915 GAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGA 104974 |||| ||| | | ||||| | | |||||| || | ||||||||||| | | | Sbjct 160905 GAAAAAAATGTAAGAATATGGGAAGCTAATGGAACAAGAGAGTTTTTAGATAATAGGAAA 160846 Query 104975 TTTCACTTTCGAAAAGAAGGT---GATTTAGGACCAATTTATGGATTTCAATGGAGACAT 105031 || |||| | ||||| | ||| |||| |||||||||||||||||||||||||| Sbjct 160845 TTA---TTTCATAGAGAAGTTAATGATCTAGGCCCAATTTATGGATTTCAATGGAGACAC 160789 Query 105032 GCTGGAGCTCAATATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGACCAATT 105090 ||| ||| |||||| || | || || | || |||| | ||||| | || || || Sbjct 160788 TTTGGTGCTGAATATACAGA-TATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTT 160730 Query 105091 AAGTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAG 105150 || | |||| | || ||||| | || ||| | |||| ||| | | Sbjct 160729 AAAAAATATTATCAATTTAATTAAAAACGATCCAACATGTAGGCGAATTATTTTGTGTGC 160670 Query 105151 TTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATT 105210 |||||||| | | ||| | ||||| | || || |||||| ||| ||||| Sbjct 160669 ATGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCTTGTCATATTTTATGTCAATT 160610 Query 105211 TTACATTAGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGG 105270 ||| || || || | ||| ||| |||||||| ||||| |||||||| Sbjct 160609 TTATGTTTTTGATGGAA---AATTATCATGTATTATGTATCAACGATCTTGTGATTTAGG 160553 Query 105271 ATTAGGTGTACCATATAATATTGGTTTCTATTCATTTTTGGTGTGTGTTCTCTCAAAATG 105330 | ||||| |||| |||||||| || |||||| | || | | | | || || Sbjct 160552 GCTTGGTGTTCCATTTAATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGT 160493 Query 105331 GTGTAATCTAACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCTAA 105390 |||||| || || | ||||||| ||| || ||| ||| |||||| ||| ||| Sbjct 160492 ATGTAATTTACAACCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAA 160433 Query 105391 CCATGTTGACCAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCC 105441 |||||||| ||||||||||| ||||| |||| ||| || | ||||| Sbjct 160432 TCATGTTGAAAGCTTAAAAATTCAGTTAAATAGAACACCCTATCCTTTCCC 160382 >seq15 Length=364150 Score = 116 bits (128), Expect = 5e-21 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 126920 TACTGGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAA 126979 || ||| |||| | |||| |||||| |||||||| ||||||| ||||| | | || Sbjct 177421 TAATGGTAGAATGCTAAAATCTAAAATATTTATAGGGCCAACATTTTATCAAAGATTAAA 177362 Query 126980 ACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATC 127038 ||||||||| |||||||||| ||||| |||||| || | |||| | |||||| Sbjct 177361 ACATATGGTGGAAGATAAAATACATGCCAGAAGTAGAGGGCCTCTAACTATGATTACA-A 177303 Query 127039 GTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAG 127098 | ||||||| || | || || |||||| ||||||||||||||||||||| || Sbjct 177302 GACAACCAACAGAAGGAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAACGAG 177243 Query 127099 ATTGTATTTTGGTTCATGGAGCCACACAATTTTTAAATGAA 127139 ||||||| | ||||||| | | || | ||||| ||| Sbjct 177242 ATTGTATGATATCTCATGGATCTGCTAAAATGTTAAAGGAA 177202 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/172 (73%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 126099 TTAAATTATCCTCAAAAACCACTTGT---TACAACCGATATTGCAGAAT-TTAATGGTCT 126154 ||| ||||||| ||||| ||| | || ||||| | || |||||| || | | | Sbjct 178602 TTATATTATCCACAAAAGCCATTAGTATGTACAAAAGCTA---CAGAATATTTACACTTT 178546 Query 126155 AAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAA 126214 ||| || | || ||| || ||||||||||||||||| ||||||||| |||||||| Sbjct 178545 AAA-GATTTACCAGCTGGAATAAATGCAATTGTAGCAATTATGTGTTACACAGGATACAA 178487 Query 126215 TCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTT 126266 |||||||||||| | || | ||| || ||||||| || | ||| ||||| Sbjct 178486 CCAAGAAGATAGTTTAATCATGAATCAATCATCTATTGATCGGGGTCTATTT 178435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658402656817360