Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 524 9e-144 seq2 322 5e-83 >seq9 Length=1049758 Score = 524 bits (580), Expect = 9e-144 Identities = 1147/1707 (67%), Gaps = 54/1707 (3%) Strand=Plus/Plus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||| || || || |||| | |||||| |||||||| | |||| ||||| || || Sbjct 572464 CTGGTCGATGAAAACACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTC 572523 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGAT---TAGTATTTTGAATAGA 47239 ||| ||||||||||| | || ||| | ||| || | | || ||| ||||| | Sbjct 572524 CCAAACTGTTTTATACAATTCTTTCAAGTCGCTAGGTATTTCACTAATATATTGAACA-- 572581 Query 47240 TCCTCCgttttctataatt--ttgttttttaat-tcatttgaccaaagttttcgttcagt 47296 | ||| || | |||| ||||| ||| || || | |||||| || ||| Sbjct 572582 -CTTCCATTATGGGCAATTAATTGTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAA 572640 Query 47297 taatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 | |||||| | ||||||||| |||| ||||| ||| || || | | | Sbjct 572641 AAGATCTTTTAACAAATGAGGATTGACAACAAAGAATTCACCACTTAAAACACGTCTGTA 572700 Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 ||| || ||||||||||||||||| | |||||||||||||| |||||||| | |||||| Sbjct 572701 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGA 572760 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNN 47475 ||||| ||||| | ||| | || ||| | ||||||| ||||| | ||| | Sbjct 572761 AGCTGTTGGCATAGGTGCTAA-AAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTT 572819 Query 47476 NNNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACAA--CATTCCAAAAATCATATT 47532 | |||||||||| | | | || | ||||||| | |||| ||| Sbjct 572820 TTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATT 572879 Query 47533 GAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAG 47592 | | |||||||| ||| ||| ||| | ||||| || ||| || || | || || | Sbjct 572880 GTAATATTCCTTTGCTTGCTGGACTACCTTGATATGATTCATATGGTCCATTTACTTGTG 572939 Query 47593 CGAGTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTT 47650 | | ||| || || | ||| || ||| |||||| || || ||||||||| || | || Sbjct 572940 CTAACTCAACAGACAT--TTCTAAAGCAGCATAATACATAGTCTCAAATATTCTTCTATT 572997 Query 47651 TAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCA 47709 || |||| || ||||| |||||| | ||||| ||||||||||| | Sbjct 572998 TA-ATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTA 573056 Query 47710 ATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTA 47769 ||||||| || || || ||||| || ||||| ||||||| || || |||||| | Sbjct 573057 ATCCTTGTACTCCTATTCCAATAGGCCTATGTCTTTTATTTGATCTTTCGGCTTCTTTAA 573116 Query 47770 ATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTT 47829 ||| || | ||| | || |||||||||| || | ||| | Sbjct 573117 TTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATAT 573176 Query 47830 CTCTTAATTTATTAAAATCAAA--CTTGTTATT---TAT-AACAAACCTATTAAGTGCTA 47883 | |||||| ||||||| ||| ||| || || ||| |||||| || | ||| | Sbjct 573177 CATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAA 573236 Query 47884 TAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCAC 47943 | || ||||||||||| |||||||| |||| || ||||||| | |||||| || Sbjct 573237 TTGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAACAATTTCACAAC 573296 Query 47944 ATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA---TTNNNNTTGTTACATG 48000 ||| ||||| |||||| || || || ||||||| |||||| || ||| |||| Sbjct 573297 ATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTG---CATG 573353 Query 48001 CGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCC 48060 | || || || | |||| | ||| |||||||| || ||| || | |||| | Sbjct 573354 CATCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAG-----C 573408 Query 48061 AAACAGTCCTAGCCTTTATAACAGCTCTAGCTTT------ATTATCATGTTCGTATTTAG 48114 |||| | | | | | || | || | ||| ||| || ||||||||| | Sbjct 573409 AAACCATAA-ATCTTGTGCAAGAACTGTTTTTTTTCCCAAATTTTCTGCTTCGTATTTTG 573467 Query 48115 TATATAACTTCTCAAATTCATCCCCATACACATTATCT-AACCCAGGACATTCATTAGGA 48173 ||||||| || |||||||| || || | | ||| || || || || ||||||||||| Sbjct 573468 TATATAATTTTTCAAATTCTTCACCCCA-AGATTCACTTAAACCTGGGCATTCATTAGGG 573526 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 ||||| || | ||| | | || | |||||||| ||||||||| ||| |||| |||| Sbjct 573527 CACATTAAAGTCCAGTTTTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAA 573586 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCA 48293 | ||| ||||||||| | || ||| | |||||| || || ||| || | | || Sbjct 573587 ATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCGTGATTTTTTCTTAAATCT 573646 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | ||| || | ||||| | ||||||||||| | ||||| || | ||| || | Sbjct 573647 AAAAATTCAAAAATATCTGAGTGCCATGGTTCAATATATACAGCAAAAGAACCCTTTCTT 573706 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || || |||||||||| |||||| || |||| ||| |||||||||||||||| || Sbjct 573707 TTTCCGCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACT 573766 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATAT---AACTTCCACTAGCTCTTATATTA 48470 | |||||||||||||||||| ||||| ||||| || || || |||| |||| Sbjct 573767 AAACCATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGAC---CTCTAATATCT 573823 Query 48471 CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTA 48530 | | || ||||||||| ||||| ||||| |||| ||||| | || | || Sbjct 573824 TGTACAGCAACACCTATACCTCCTGCTGTTTTACTAATTAATGCACATTGCTTTAATGTT 573883 Query 48531 TCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGC 48590 ||| | || |||||||| |||| | |||| ||||| ||| || ||||||||| Sbjct 573884 TCAAATATACCTTCTATCGAATCAGATTTCATCGATAATAAAAAGCATGAAGACATTTGG 573943 Query 48591 GGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGAT 48650 || ||||| ||||||||||||||||||| |||||| |||| |||| | || Sbjct 573944 GGCCTTGGTGTTCCCGAATTAAATAATGTTGGAGTAGCATGAGTAAAATATTTTTGAGAC 574003 Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATAC 48709 | || | ||| ||||| | | | || | ||| || | |||||| ||||||||||| Sbjct 574004 ATTAAATGATAAGTTTCTAAAGCCTTTTCAAGATCATCAAT-ATGTATTCCTATAGATAC 574062 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 | |||||| | || |||||| | ||||| |||||| ||||| || || | || || Sbjct 574063 TCTCATTAATAAATGTTGAGGGCGTTCAATAATTTTATTATTAATACGTAATAAGTAGGA 574122 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATA 48796 | | || ||||||||||| |||||||| Sbjct 574123 TCTCTCTAATGTTTTAAATCCAAAATA 574149 >seq2 Length=1775135 Score = 322 bits (356), Expect = 5e-83 Identities = 607/877 (69%), Gaps = 27/877 (3%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || |||||||| ||||||||||||||||||||||| | ||| ||||| | Sbjct 183218 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTGTAAAGATATTAA 183277 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAA 18785 ||||| || ||||||||||||| || | | ||| | ||||| |||||| Sbjct 183278 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAACAACCTAAACATTCTAA 183337 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 || | | ||| || ||||||| || ||| ||| | |||||||||| || Sbjct 183338 TAATCG---ATCAGCAACAAATTCGATGTATTGAGACATAAGTCTTGAATTCATTCCAAT 183394 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 ||| | | ||||| | || || |||| | ||||| | ||||| ||| || Sbjct 183395 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTT-TA- 183452 Query 18906 AATAGATAC--AACTCTATCTTCATTAGGAGGGTATAG---AAGATGTTTAAACATCAAA 18960 | || || | ||| ||||| | | | ||| || | | | || || ||| Sbjct 183453 ACTATATTCTGAACAACCTCTTC--TGGTAATTTATTTTCTAACAAGCTATAA-ATTAAA 183509 Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || |||||| |||| ||| || || ||||| || ||||||||| |||||||||| Sbjct 183510 CAATTAAAATCTGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAA 183569 Query 19021 CCAGGCATCAGTCCTCtt--ttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGA 19078 || | | | | | || ||||| ||||| ||||| | | ||| |||| ||| | Sbjct 183570 CCGTGTA--ATTTATTTTGCTTTTTAAACCAAAATATTGCACAAAAGCTTCCACTAAATA 183627 Query 19079 ATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTAT 19138 |||| ||||| || |||| ||| || | |||||| || || | || ||| || Sbjct 183628 ATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAA---GAATTTGTATCAT 183684 Query 19139 GAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 |||||||| |||||| || || ||||||| ||| || | || |||| || Sbjct 183685 TTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCAT 183744 Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 ||||| || | | ||| | ||| |||| ||| ||| || |||||||| || Sbjct 183745 GAAATAAATTTAACCTCTCCTTCTCATCCTTAATATAATTATCAATTAATAAACTATATG 183804 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| || || |||||||| | ||| || ||||| ||||| | | ||||| ||| Sbjct 183805 TTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGAATAAAACTTTTTAGCTTCAATTA 183864 Query 19319 TCTGTACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAACTATTCCATCACTAGCT 19377 | ||||| || || ||||| || | | |||||||||| |||||||||||||||||| Sbjct 183865 TTTGTACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCT 183923 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA 19437 |||||||||||||| |||||||| |||||||||||||||| | ||||| | ||| || Sbjct 183924 GCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAAT-TTTTCAAA 183982 Query 19438 -TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || || | ||| | |||||||||| ||||||| | |||||||| || || || ||||| Sbjct 183983 GTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTT 184042 Query 19497 TTTATACATGTTCCATATATCACGATATTGTATAGGA 19533 |||||| | ||||||| ||| ||||| |||||| Sbjct 184043 TTTATAAAAATTCCATACTTCAGGATATATAATAGGA 184079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108336260240